View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1297_high_42 (Length: 347)
Name: NF1297_high_42
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_42 |
 | |
|
| [»] scaffold0351 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0750 (1 HSPs) |
| | |
|
| [»] scaffold0124 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 36931007 - 36931199
Alignment:
| Q |
29 |
aatgtgaaatttgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagct |
128 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
36931007 |
aatgtgaaaattgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtcgtt |
36931106 |
T |
|
| Q |
129 |
gcaagacaaaaatagatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcctgaaaatccaaaataccacgggttgctaa |
221 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36931107 |
gcaagacaaaaatagatgtcgtgcatcttccatcaagccacaacctgatacatataaacacgcctgaaaatccaaaataccacgggttgctaa |
36931199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 13415516 - 13415688
Alignment:
| Q |
40 |
tgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaa |
139 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | ||| |||| || |||||||||||||| |||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
13415516 |
tgagcacaatgatttgaaatatcacaatgatcgacaccagcaaaacctatccaagacctcaccaaagaccataaagaaccaaagaaactgcaagacaaaa |
13415615 |
T |
|
| Q |
140 |
atagatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcctgaaaatccaaaataccacg |
212 |
Q |
| |
|
||| || |||||||||||||| || ||||| | ||| |||||||| || |||| ||| |||||||||||| |
|
|
| T |
13415616 |
ataaatgtcgtgcatcttccacgaaaccacatcttgacacacataagcatgcctctgaattcaaaataccacg |
13415688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 6728081 - 6727931
Alignment:
| Q |
43 |
gcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaata |
142 |
Q |
| |
|
|||||||||||| ||||||| ||||||| | | ||||||||| |||||||||||||| || | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
6728081 |
gcacaatgatttgaaatatcgcaatgattgacactatcaaagcctatccaagacctcaccaacgaccataaagaaccaaagaagctgcaagacaaaaata |
6727982 |
T |
|
| Q |
143 |
gatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcct |
193 |
Q |
| |
|
|| ||| |||||||||| || ||||| ||||| ||||||||||| |||| |
|
|
| T |
6727981 |
aatgtcgagcatcttccaataaaccacaccctgacacacataaacatgcct |
6727931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 186
Target Start/End: Complemental strand, 27951717 - 27951579
Alignment:
| Q |
48 |
atgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaatagatat |
147 |
Q |
| |
|
||||||| | ||||||||||||||| | ||||||||||| |||||||||| ||| ||| ||||||||||||||| | |||||||||||||||| || | |
|
|
| T |
27951717 |
atgatttgagatatcacaatgatcaacaccatcaaagcctatccaagaccgcaccaaaaaccataaagaaccaaaaaaactgcaagacaaaaataaatgt |
27951618 |
T |
|
| Q |
148 |
cgtgcatcttccatcaagccacaacctgatacacataaa |
186 |
Q |
| |
|
||||||||||||| || ||||| ||||| ||||||||| |
|
|
| T |
27951617 |
cgtgcatcttccacgaaaccacatcctgacacacataaa |
27951579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 2208126 - 2207955
Alignment:
| Q |
43 |
gcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaata |
142 |
Q |
| |
|
|||| ||||||| | || || ||||||||| | |||||||| || |||||||| ||||| | |||||||| ||||||| | |||||||||||||||| |
|
|
| T |
2208126 |
gcaccatgatttgagatgtcgcaatgatcaacaccatcaaaacctatccaagatctcaccagcggccataataaaccaaaaaatctgcaagacaaaaata |
2208027 |
T |
|
| Q |
143 |
gatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcctgaaaatccaaaataccacggg |
214 |
Q |
| |
|
|| ||| || ||||||| || ||||| ||||| ||||||||||| |||| || |||||||||||||| |
|
|
| T |
2208026 |
aatgtcgagcgtcttccaataatccacaccctgacacacataaacatgcctctgaactcaaaataccacggg |
2207955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 15602146 - 15602338
Alignment:
| Q |
29 |
aatgtgaaatttgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagct |
128 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15602146 |
aatgtgaaaactgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagct |
15602245 |
T |
|
| Q |
129 |
gcaagacaaaaatagatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcctgaaaatccaaaataccacgggttgctaa |
221 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15602246 |
gcaagacaaaaatagatgtcgtgcatcttccaacatgccgcaacctgatacacataaacacgcctgaaaatccaaaataccacgggttgctaa |
15602338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 28633569 - 28633378
Alignment:
| Q |
31 |
tgtgaaatttgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgc |
130 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| | |||| |
|
|
| T |
28633569 |
tgtgaaaattgagcacaatgatttaaaatatcacaatgatcggcctcatcaaagccaatccaagacctcactaaaggccataaagagccaaagcatctgc |
28633470 |
T |
|
| Q |
131 |
aagacaaaaatagatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcctgaaaatccaaaataccacgggttgctaaa |
222 |
Q |
| |
|
|||||||||||| || || |||||||||| | ||||||||||| ||||| || ||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
28633469 |
aagacaaaaataaatggcgcgcatcttccaagagaccacaacctgacacacacaagcacgcctgagcatccaagataccacggtttgctaaa |
28633378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 6343958 - 6343766
Alignment:
| Q |
29 |
aatgtgaaatttgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagct |
128 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6343958 |
aatgtaaaaattgagcacaatgatttaaaatatcacaatgatcaaccccatcaaagccaatccaagacctcactaaaggccataaagtaccaaagtagct |
6343859 |
T |
|
| Q |
129 |
gcaagacaaaaatagatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcctgaaaatccaaaataccacgggttgctaa |
221 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
6343858 |
gcaagacaaaaatagatgtcgtgcatcttccatcaagccacaccctgatacacataaacacacctgaaaatccaaaataccacaggttgctaa |
6343766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 45165863 - 45165713
Alignment:
| Q |
43 |
gcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaata |
142 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | ||||||||||| ||||| || ||||| || | |||||||||| ||||| |||||||||||||||||| |
|
|
| T |
45165863 |
gcacaatgatttgaaatgtcacaatgatcaacaccatcaaagcctatccaggatctcaccaacgaccataaagaagcaaagaagctgcaagacaaaaata |
45165764 |
T |
|
| Q |
143 |
gatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcct |
193 |
Q |
| |
|
|| ||| |||||||||| || ||||| ||| | ||||||||||| |||| |
|
|
| T |
45165763 |
aatgtcgagcatcttccaataaaccacaccctaacacacataaacatgcct |
45165713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 39694307 - 39694478
Alignment:
| Q |
43 |
gcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaata |
142 |
Q |
| |
|
|||| ||||||| | || || ||||||||| | |||||||| || |||||||| ||||| | |||||||| ||||||| | |||||||||||||||| |
|
|
| T |
39694307 |
gcaccatgatttgatatgtcgcaatgatcaacaccatcaaaacctatccaagatctcaccagcggccataataaaccaaaaaatctgcaagacaaaaata |
39694406 |
T |
|
| Q |
143 |
gatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcctgaaaatccaaaataccacggg |
214 |
Q |
| |
|
|| ||| || ||||||| || ||||| ||||| ||||||||||| |||| || |||||||||||||| |
|
|
| T |
39694407 |
aatgtcgagcgtcttccaataaaccacaccctgacacacataaacatgcctctgaactcaaaataccacggg |
39694478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 54684434 - 54684624
Alignment:
| Q |
31 |
tgtgaaatttgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgc |
130 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
54684434 |
tgtgaaaactgagcacaatgatttaaaatatcacaatgatcagccctatcaaagccaatccaagacctcactaaaggccataaagaaccaaagcatctgc |
54684533 |
T |
|
| Q |
131 |
aagacaaaaatagatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcctgaaaatccaaaataccacgggttgctaa |
221 |
Q |
| |
|
|||||| |||||||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
54684534 |
aagacagaaatagatggcgtgcatcttccaacagtccacaacctgacacacataaacacgcctgtaaatccaagataccacgggttgctaa |
54684624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 43 - 193
Target Start/End: Original strand, 40687903 - 40688053
Alignment:
| Q |
43 |
gcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaata |
142 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||| || | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
40687903 |
gcacaatgatttgaaatatcacaatgatcaacaccatcaaagcctatccaagacctcaccaacgaccataaagaaccaaagaagctgcaagacaaaaata |
40688002 |
T |
|
| Q |
143 |
gatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcct |
193 |
Q |
| |
|
|| ||| |||||||||| || ||||| ||||| ||||||||||| |||| |
|
|
| T |
40688003 |
aatgtcgagcatcttccaataaaccacatcctgacacacataaacatgcct |
40688053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 17874728 - 17874881
Alignment:
| Q |
40 |
tgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaa |
139 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||| ||||||| |
|
|
| T |
17874728 |
tgagcacaatgatttgaaatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaagaccataaagaaccaaagaagctgcacgacaaaa |
17874827 |
T |
|
| Q |
140 |
atagatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcct |
193 |
Q |
| |
|
||| || || |||||||||| || ||||| ||||| |||||||| ||||||| |
|
|
| T |
17874828 |
ataaatgacgagcatcttccacgaaaccacatcctgacacacataagcacgcct |
17874881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 19163480 - 19163311
Alignment:
| Q |
43 |
gcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaata |
142 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | ||||||||||| ||||| || ||||| || | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
19163480 |
gcacaatgatttgaaatgtcacaatgatcaacaccatcaaagcctatccaggatctcaccaacgaccataaagaaccaaagaagctgcaagacaaaaata |
19163381 |
T |
|
| Q |
143 |
gatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcctgaaaatccaaaataccacg |
212 |
Q |
| |
|
|| ||| |||||||||| | ||||| ||||| ||||||||||| |||| ||| |||||||||||| |
|
|
| T |
19163380 |
aatgtcgagcatcttccaaaacaccacaccctgacacacataaacaagcctctgaattcaaaataccacg |
19163311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 23131116 - 23130996
Alignment:
| Q |
40 |
tgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaa |
139 |
Q |
| |
|
||||||| ||||||| | |||||||||||||| | ||||||||||| |||||||||||||| ||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
23131116 |
tgagcaccatgatttgatatatcacaatgatccacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaaaaaactgcaagacaaaa |
23131017 |
T |
|
| Q |
140 |
atagatatcgtgcatcttcca |
160 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
23131016 |
ataaatatcgtgcatcttcca |
23130996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 22877772 - 22877627
Alignment:
| Q |
40 |
tgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaa |
139 |
Q |
| |
|
||||||| ||||||| | |||||||||| ||| | ||||||||||| |||||||||||||| ||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
22877772 |
tgagcaccatgatttgatatatcacaataatccacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaactgcaagacaaaa |
22877673 |
T |
|
| Q |
140 |
atagatatcgtgcatcttccatcaagccacaacctgatacacataa |
185 |
Q |
| |
|
||| || |||||||||||||| || ||||| |||| |||||||| |
|
|
| T |
22877672 |
ataaatgtcgtgcatcttccacgaaaccacatcctgtcacacataa |
22877627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 30713197 - 30713005
Alignment:
| Q |
29 |
aatgtgaaatttgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagct |
128 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
30713197 |
aatgtgaaaactgagcacaatgatttaaaatatcacaatgatcagcctcatcaaagccaatccaagacctcactaaaggccataaagaaccaaagcatct |
30713098 |
T |
|
| Q |
129 |
gcaagacaaaaatagatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcctgaaaatccaaaataccacgggttgctaa |
221 |
Q |
| |
|
|||||||| ||||| || |||||||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||||| |||| |||| |
|
|
| T |
30713097 |
gcaagacagaaatatatggtgtgcatcttccaacagtccacaacctgacacacataaacacgcctgtaaatccaagataccacaggttactaa |
30713005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 28381800 - 28381852
Alignment:
| Q |
62 |
cacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaa |
114 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
28381800 |
cacaatgatcagcaccatcaaagcatatccaagatctcaccaaaggccataaa |
28381852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 219 - 335
Target Start/End: Complemental strand, 32581104 - 32580988
Alignment:
| Q |
219 |
taaagtgataaaatcatattcaacattttacatgcaaagagaaaaagcaatggctgaaattattaattttgtttatgtcacgattctatttctttccttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32581104 |
taaagtgataaaatcatattcaacattttacatgcaaagagaaaaagcaatgactgaaattattaattttgtttatgtcacgattctatttctttccttg |
32581005 |
T |
|
| Q |
319 |
tttcgtgtcgcaacagc |
335 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32581004 |
tttcgtgtcgcaacagc |
32580988 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 219 - 333
Target Start/End: Complemental strand, 32573726 - 32573612
Alignment:
| Q |
219 |
taaagtgataaaatcatattcaacattttacatgcaaagagaaaaagcaatggctgaaattattaattttgtttatgtcacgattctatttctttccttg |
318 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32573726 |
taaaatgataaaatcatattcaaccttttacatgcaaagagaaaaagttatggctgaaattatcaattttgtttatgtcacgattctatttcttttcttc |
32573627 |
T |
|
| Q |
319 |
tttcgtgtcgcaaca |
333 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
32573626 |
tttcatgtcgcaaca |
32573612 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 35837042 - 35837214
Alignment:
| Q |
40 |
tgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaa |
139 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || ||| ||||||| |||||||||||||| ||||||||||| ||||||||| | |||| ||||||| |
|
|
| T |
35837042 |
tgagcacaatgatttgaaatatcacaatgatcggcaccaacaaagcctatccaagacctcaccaaaggccataatgaaccaaagaatttgcaggacaaaa |
35837141 |
T |
|
| Q |
140 |
atagatatcgtgcatcttccatcaag-ccacaacctgatacacataaacacgcctgaaaatccaaaataccacg |
212 |
Q |
| |
|
| | || | |||||||||| |||| ||||| ||||| |||||||| ||||||| ||||||| |||||||| |
|
|
| T |
35837142 |
agaaatggtgagcatcttcca-caagaccacaccctgacacacataagcacgcctctgaatccaagataccacg |
35837214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 36255617 - 36255765
Alignment:
| Q |
45 |
acaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaataga |
144 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||| ||| || |||||||| |||| || | |||||||| ||||||| || |||| |||||||||| | |
|
|
| T |
36255617 |
acaatgatttgaaatatcacaatgatcaacaccattaaaacctatccaagatctcatcaacgaccataaagtaccaaagaagttgcaggacaaaaataaa |
36255716 |
T |
|
| Q |
145 |
tatcgtgcatcttccatcaagccacaacctgatacacataaacacgcct |
193 |
Q |
| |
|
| ||| || |||| || || ||||| ||||| ||||||||||| |||| |
|
|
| T |
36255717 |
tgtcgagcgtctttcaaaaaaccacaccctgacacacataaacaagcct |
36255765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 332
Target Start/End: Complemental strand, 32610703 - 32610596
Alignment:
| Q |
225 |
gataaaatcatattcaacattttacatgcaaagagaaaaagcaatggctgaaattattaattttgtttatgtcacgattctatttctttccttgtttcgt |
324 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| | |||| ||| || ||||||| || ||||||||||| | || | |||||||||||| |||| | |
|
|
| T |
32610703 |
gataaaattatattcaactttttacatgcaaataagaaaaaatatgactaaaattatcaaatttgtttatgtgatgagtacatttctttccttatttctt |
32610604 |
T |
|
| Q |
325 |
gtcgcaac |
332 |
Q |
| |
|
|||||||| |
|
|
| T |
32610603 |
gtcgcaac |
32610596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 8564961 - 8564794
Alignment:
| Q |
43 |
gcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaata |
142 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | ||||||||||| |||||||| ||||| || | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
8564961 |
gcacaatgatttgaaatgtcacaatgatcaacaccatcaaagcctatccaagatctcaccaatgaccataaagaaccaaagaagctgcaagacaaaaata |
8564862 |
T |
|
| Q |
143 |
gatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcctgaaaatccaaaatacca |
210 |
Q |
| |
|
|| ||| |||||||||| || ||||| ||||| |||||| |||| |||| ||| |||||||||| |
|
|
| T |
8564861 |
aatgtcgagcatcttccaaaaaaccacaccctgacacacattaacatgcctctgaattcaaaatacca |
8564794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 4311138 - 4310969
Alignment:
| Q |
43 |
gcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaata |
142 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | ||||||||| | |||||||| ||||| || | |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
4311138 |
gcacaatgatttgaaatatcacaatgatcaacaccatcaaagtctatccaagatctcaccaatgaccataaagaaccaaagaagctgaaagacaaaaata |
4311039 |
T |
|
| Q |
143 |
gatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcctgaaaatccaaaataccacg |
212 |
Q |
| |
|
|| ||| |||||||||| || ||||| ||| | ||||||||||| |||| ||| |||||||||||| |
|
|
| T |
4311038 |
aatgtcgagcatcttccaataaaccacaccctaacacacataaacatgcctctgaattcaaaataccacg |
4310969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 39297866 - 39297775
Alignment:
| Q |
40 |
tgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgca |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
39297866 |
tgagcacaatgatttaaaatatcacaatgatcgtcaccatcaaagcatatccaagacctcaccaaagaccataaagaaccaaagaagctgca |
39297775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 13296 - 13146
Alignment:
| Q |
43 |
gcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaata |
142 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | ||||||||||| |||||||| ||||| || | |||||||||| ||||| |||||||||||||||||| |
|
|
| T |
13296 |
gcacaatgatttgaaatgtcacaatgatcaacaccatcaaagcctatccaagatctcaccaatgaccataaagaatcaaagaagctgcaagacaaaaata |
13197 |
T |
|
| Q |
143 |
gatatcgtgcatcttccatcaagccacaacctgatacacataaacacgcct |
193 |
Q |
| |
|
|| ||| |||||||||| || ||||| ||||| ||||||||||| |||| |
|
|
| T |
13196 |
aatgtcgagcatcttccaaaaaaccacaccctgacacacataaacatgcct |
13146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 8129784 - 8129929
Alignment:
| Q |
40 |
tgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaa |
139 |
Q |
| |
|
||||||| ||||||| | |||||||||||||| | ||||||||||| |||||||||||||| ||| |||||||||| ||||| | ||||||||||||| |
|
|
| T |
8129784 |
tgagcaccatgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaatcaaagaaactgcaagacaaaa |
8129883 |
T |
|
| Q |
140 |
atagatatcgtgcatcttccatcaagccacaacctgatacacataa |
185 |
Q |
| |
|
||| || |||||||||||||| || |||||||||| ||||||||| |
|
|
| T |
8129884 |
ataaatgtcgtgcatcttccacgaaaccacaacctgttacacataa |
8129929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 6985735 - 6985855
Alignment:
| Q |
40 |
tgagcacaatgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaa |
139 |
Q |
| |
|
||||||| |||| || | |||||||||||||| | ||||||||||| |||||||||||||| ||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
6985735 |
tgagcaccatgaattgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaactgcaagacaaaa |
6985834 |
T |
|
| Q |
140 |
atagatatcgtgcatcttcca |
160 |
Q |
| |
|
||| || |||||||||||||| |
|
|
| T |
6985835 |
ataaatgtcgtgcatcttcca |
6985855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 186
Target Start/End: Complemental strand, 45107 - 44969
Alignment:
| Q |
48 |
atgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaatagatat |
147 |
Q |
| |
|
||||||| | ||||||||||||||| | ||||||||||| |||||||||| ||| ||| ||||||||||||||| | |||||||||||||||| || | |
|
|
| T |
45107 |
atgatttgagatatcacaatgatcaacaccatcaaagcctatccaagaccgcaccaaaaaccataaagaaccaaaaaaactgcaagacaaaaataaatgt |
45008 |
T |
|
| Q |
148 |
cgtgcatcttccatcaagccacaacctgatacacataaa |
186 |
Q |
| |
|
||||||||||||| || ||||| ||||| ||||||||| |
|
|
| T |
45007 |
cgtgcatcttccacgaaaccacatcctgacacacataaa |
44969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0750 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0750
Description:
Target: scaffold0750; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 5892 - 6004
Alignment:
| Q |
48 |
atgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaatagatat |
147 |
Q |
| |
|
||||||| | |||||||||||||| | ||||||||||| |||||||||||||| ||| |||||||||||||||| | || ||||||||||||| || | |
|
|
| T |
5892 |
atgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaactacaagacaaaaataaatgt |
5991 |
T |
|
| Q |
148 |
cgtgcatcttcca |
160 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5992 |
cgtgcatcttcca |
6004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0124 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0124
Description:
Target: scaffold0124; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 22254 - 22366
Alignment:
| Q |
48 |
atgatttaaaatatcacaatgatcagccccatcaaagccaatccaagacctcactaaaggccataaagaaccaaagtagctgcaagacaaaaatagatat |
147 |
Q |
| |
|
||||||| | |||||||||||||| | ||||||||||| |||||||||||||| ||| |||||||||||||||| | || ||||||||||||| || | |
|
|
| T |
22254 |
atgatttgatatatcacaatgatcgacaccatcaaagcctatccaagacctcaccaaaaaccataaagaaccaaagaaactacaagacaaaaataaatgt |
22353 |
T |
|
| Q |
148 |
cgtgcatcttcca |
160 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22354 |
cgtgcatcttcca |
22366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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