View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_high_43 (Length: 345)

Name: NF1297_high_43
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_high_43
NF1297_high_43
[»] chr5 (1 HSPs)
chr5 (14-293)||(43572247-43572526)
[»] chr7 (1 HSPs)
chr7 (46-151)||(48429214-48429321)
[»] chr6 (1 HSPs)
chr6 (56-151)||(20867357-20867451)
[»] chr2 (2 HSPs)
chr2 (46-143)||(29492938-29493036)
chr2 (175-287)||(4522788-4522899)
[»] chr3 (3 HSPs)
chr3 (14-152)||(7701818-7701959)
chr3 (63-151)||(11013574-11013662)
chr3 (84-135)||(33720621-33720672)
[»] chr1 (3 HSPs)
chr1 (46-151)||(6854540-6854649)
chr1 (84-148)||(52976008-52976072)
chr1 (84-143)||(52681769-52681828)
[»] chr4 (3 HSPs)
chr4 (25-133)||(56518493-56518604)
chr4 (110-154)||(25244756-25244800)
chr4 (109-149)||(13417413-13417453)
[»] chr8 (1 HSPs)
chr8 (84-143)||(36073942-36074001)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 43572526 - 43572247
Alignment:
Q  14 atatgtctacctttgtgaactctaatcaaaagactgcagatatttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43572526 atatgtctacctttgtgaactctaatcaaaagactgcagatatttaagcaaaagtttggaaagacccatctttgagcatttgataagcaagatgggcatg 43572427  T
Q  114 atagatatctatgcaccaacttgagaggggtgttggaatgtgtacctgtgtgtgtgttttctttctagaaggatccacatgattcttttggtcaatacat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43572426 atagatatctatgcaccaacttgagaggggtgttggaatgtgtacctgtgtgtgtgttttctttctagaaggatccacatgattcttttggtcaatacat 43572327  T
Q  214 taactttctatttattgttcatttattcttattccctaaaattctcattgtgaattattatcacttattgtaatcctcac 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43572326 taactttctatttattgttcatttattcttattccctaaaattctcattgtgaattattatcacttattgtaatcctcac 43572247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 48429214 - 48429321
Alignment:
Q  46 actgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttga-gagggg 143  Q
    ||||||||||| || | |||||| ||||||||||||| ||||||||||||||||  |||| |||||||||||||||||||||||||||||||| | ||||    
T  48429214 actgcagatatcttgaccaaaagcttggcaagacccacctttgagcatttgatagacaagttgggcatgatagatatctatgcaccaacttgaggggggg 48429313  T
Q  144 tgttggaa 151  Q
    ||||||||    
T  48429314 tgttggaa 48429321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 20867357 - 20867451
Alignment:
Q  56 tttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagaggggtgttggaa 151  Q
    ||||| |||||| ||||| |||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||    
T  20867357 tttaaccaaaagcttggcgagacccgtcgttgagcatttgataagcaagttgggcatgatagatatctatgcaccaactt-aggggggtgttggaa 20867451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 29493036 - 29492938
Alignment:
Q  46 actgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagagggg 143  Q
    ||||||||||| || | |||||| ||||||||||||| ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||| ||||    
T  29493036 actgcagatatcttgaccaaaagcttggcaagacccacctttgagcatttgatagacaagttgggcatgatagatatctatgcaccaacttgagggggg 29492938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 4522899 - 4522788
Alignment:
Q  175 tttctagaaggatccacatgattcttttggtcaatacattaactttctatttattgttcatttattcttattccctaaaattctcattgtgaattattat 274  Q
    ||||||||||||||||||| |||||| | | |||| ||| | ||||||| | ||||| | |||||| ||||| |||||||||||||||| ||||||||||    
T  4522899 tttctagaaggatccacataattcttatagccaatgcat-atctttctactcattgtccctttatttttatttcctaaaattctcattgagaattattat 4522801  T
Q  275 cacttattgtaat 287  Q
    |||||||||||||    
T  4522800 cacttattgtaat 4522788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 7701818 - 7701959
Alignment:
Q  14 atatgtctaccttt-gtgaactctaatcaaaagactgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggca 111  Q
    |||||||||||||| ||||  | || |||| | ||||| ||||| |||| ||| || |||||||||||  ||||||||||||||||| ||| | ||||||    
T  7701818 atatgtctaccttttgtgacttatagtcaacaaactgctgatatcttaaccaagagcttggcaagacctgtctttgagcatttgataggcatgttgggca 7701917  T
Q  112 tgatagatatctatgcaccaacttga-gaggggtgttggaat 152  Q
    ||||||| |||||||||||||||||| ||||||||| |||||    
T  7701918 tgatagacatctatgcaccaacttgaggaggggtgtcggaat 7701959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 11013574 - 11013662
Alignment:
Q  63 aaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagaggggtgttggaa 151  Q
    ||||| |||| |||||| | |||||||||||| |||  |||| |||||||||| ||||||||||||||||||||||  |||||| ||||    
T  11013574 aaaagcttggtaagaccaacctttgagcatttaatagacaagttgggcatgattgatatctatgcaccaacttgaggagggtgtgggaa 11013662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 33720621 - 33720672
Alignment:
Q  84 tttgagcatttgataagcaagatgggcatgatagatatctatgcaccaactt 135  Q
    ||||||||| | ||||||||| |||||||||| |||||||||||||||||||    
T  33720621 tttgagcatctcataagcaagttgggcatgattgatatctatgcaccaactt 33720672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 6854649 - 6854540
Alignment:
Q  46 actgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatgatag--atatctatgcaccaacttga-gagg 141  Q
    ||||||||||| || | |||||| ||||||||||||| ||||||||||||||||   ||| ||||||||||||  |||||||||||||||||||| | ||    
T  6854649 actgcagatatcttgaccaaaagcttggcaagacccacctttgagcatttgatagataagttgggcatgatagatatatctatgcaccaacttgaggggg 6854550  T
Q  142 ggtgttggaa 151  Q
    ||||||||||    
T  6854549 ggtgttggaa 6854540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 52976072 - 52976008
Alignment:
Q  84 tttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagaggggtgttg 148  Q
    ||||||||| | ||||||||| |||||||||| |||||||||||||||||||||| | |||||||    
T  52976072 tttgagcatgtcataagcaagttgggcatgattgatatctatgcaccaacttgagggaggtgttg 52976008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 52681828 - 52681769
Alignment:
Q  84 tttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagagggg 143  Q
    ||||||||| | ||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  52681828 tttgagcatctcataagcaagttgggcatgattgatatctatgcaccaacttgagggggg 52681769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 56518493 - 56518604
Alignment:
Q  25 tttgtgaactctaatcaaaagactgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggc--atgatagatat 121  Q
    ||||||| ||||| |||| | ||||| ||||| |||| |||||| |||||||||||| ||||||||||||||||||||||| ||| |  |||||||||||    
T  56518493 tttgtgacctctagtcaacaaactgcggatatcttaaccaaaagattggcaagacccgtctttgagcatttgataagcaagttggccatatgatagatat 56518592  T
Q  122 ctatgcaccaac 133  Q
    | ||| ||||||    
T  56518593 cgatgaaccaac 56518604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 25244800 - 25244756
Alignment:
Q  110 catgatagatatctatgcaccaacttgagaggggtgttggaatgt 154  Q
    |||||| ||| |||||||||||||||||||||||||||| |||||    
T  25244800 catgattgatctctatgcaccaacttgagaggggtgttgaaatgt 25244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 13417453 - 13417413
Alignment:
Q  109 gcatgatagatatctatgcaccaacttgagaggggtgttgg 149  Q
    |||| ||||||||||||||| ||||||||| ||||||||||    
T  13417453 gcatcatagatatctatgcatcaacttgaggggggtgttgg 13417413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 36074001 - 36073942
Alignment:
Q  84 tttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagagggg 143  Q
    ||||||||| | ||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  36074001 tttgagcatctcataagcaagttgggcatgattgatatctatgcaccaacttgagggggg 36073942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University