View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_5 (Length: 626)
Name: NF1297_high_5
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 492
Target Start/End: Original strand, 52443394 - 52443879
Alignment:
| Q |
13 |
aatatgaacatgtcgattttgatgaaggagg------atgtcttcgatcaaagtgacatatttgcgaaatcttggtatttaaaaatggagggtatcaaca |
106 |
Q |
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| T |
52443394 |
aatatgaacatgtcgattttgatggaggaggtctttgatgtcttcgatcaaagtgacatatttgcgaaatcttggtatttaaaaatggagggtatcaaca |
52443493 |
T |
|
| Q |
107 |
cagtgaagagattatgtgtaacaagtaatggttattcaattgtttagccaacaaaagcactagatctattgcatggagttcaacaatggcttgcccaaag |
206 |
Q |
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| T |
52443494 |
tagtgaagagattatgtgtaacaagtaatggtgattcaattgtttagccaacaaaagcacttgatctattgcatggagttcaacaatggcttgcccaaag |
52443593 |
T |
|
| Q |
207 |
ataatcggggaagcaaggggatgaatgtagaagtcgtattatggggttcgatcataaggtggtattgtgggattgctacattggtgatgctagaagaatt |
306 |
Q |
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| T |
52443594 |
ataatcggggaagcaaggggataaatgtataagtcgtattatggggttcgatcataaggtggtattatgggattgctacattggtgatgctagaagaatt |
52443693 |
T |
|
| Q |
307 |
acgattacgccaagcccactaaatgcctgttgcaaaaatattgaattttttcaaataactcaacataatcattgttaccaatgtagtcagaaatactggt |
406 |
Q |
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| T |
52443694 |
gcgattacgccaagcccactaaatgcctgttgcaaaaatactgaattttttcaaataactcaacataatcaccgttaccaatgtagtcagaaatactggt |
52443793 |
T |
|
| Q |
407 |
gatgccagacaaacccaacttaagccagctaattgaatccaaattgaaaaagaacccagcataatcaccatcacccataattactt |
492 |
Q |
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| T |
52443794 |
gatgttagacaaaccccacttaagccagctaattgaatccaaattgaaaaagaacccagcataatcaccattacccataattactt |
52443879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 531
Target Start/End: Original strand, 52443895 - 52443924
Alignment:
| Q |
502 |
caattctaccatctaatttatactagtttc |
531 |
Q |
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| T |
52443895 |
caattctaccatctaatttatactagtttc |
52443924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 37304387 - 37304434
Alignment:
| Q |
134 |
atggttattcaattgtttagccaacaaaagcactagatctattgcatg |
181 |
Q |
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| T |
37304387 |
atggttattcaattgtttagccaacaaaagcccttgatgtattgcatg |
37304434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 12300083 - 12299995
Alignment:
| Q |
47 |
tcttcgatcaaagtgacatatttgcgaaatcttggtatttaaaaatggagggtatcaacacagtgaagagattatgtgtaacaagtaat |
135 |
Q |
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| T |
12300083 |
tcttggatcaaagtgacatatttgtaaaactttggtgtttgaacatgcaggatatcaacacaatgaagaaaatctgtgtaacaagtaat |
12299995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 35798042 - 35797954
Alignment:
| Q |
43 |
gatgtcttcgatcaaagtgacatatttgcgaaatcttggtatttaaaaatggagggtatcaacacagtgaagagattatgtgtaacaag |
131 |
Q |
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| T |
35798042 |
gatgttttggatcagagtgtcatatttgtgaaatcttggtgtttgaacttgtaggatatcaacataatgaagagaatatgtgcaacaag |
35797954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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