View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1297_high_51 (Length: 316)
Name: NF1297_high_51
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 36433160 - 36433436
Alignment:
| Q |
11 |
cacagataaatagcaccgacgttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttga |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36433160 |
cacagataaatagcaccgacgttatagctcaactatctgatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggatagctttga |
36433259 |
T |
|
| Q |
111 |
ttatcccacggacacttggcttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36433260 |
ttatcccacggacacttggcttccatatcaaaggcttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggatgaccct |
36433359 |
T |
|
| Q |
211 |
ggaaaaggtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaaacataaccttccctg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36433360 |
ggaaaaggtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaaacataaccttccctg |
36433436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 36368532 - 36368793
Alignment:
| Q |
11 |
cacagataaatagcaccgacgttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttga |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||||||||||||| ||||| |
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| T |
36368532 |
cacagataaatagcaccaacgttatagctcaactatcggatataggaaaccttgttttgatgctaaaaagctccaaaactgtcatatgggaaagttttga |
36368631 |
T |
|
| Q |
111 |
ttatcccacggacacttggcttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccct |
210 |
Q |
| |
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| |||| || || || | ||||||||||| | |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| || |||||| |
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| T |
36368632 |
tcatcctacagataccttgcttccatatctcaaggttggttttgatagaaaaactaatcaaagctggtttctccaatcatggaagacagatgatgaccct |
36368731 |
T |
|
| Q |
211 |
ggaaaaggtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaa |
272 |
Q |
| |
|
|||||||| || ||||| ||||||||||||| | |||| ||| ||||| | ||||||||||| |
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|
| T |
36368732 |
ggaaaaggcgcattcacattgaaattcagcagcattggaaaacctcagttgtttatgtacaa |
36368793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 31 - 284
Target Start/End: Original strand, 36403843 - 36404096
Alignment:
| Q |
31 |
gttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatcccacggacacttggc |
130 |
Q |
| |
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|||||||| || |||| || |||| |||| ||||| ||||| |||||| || ||||||||||| ||||||||||||||| ||||||| ||||| | || |
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| T |
36403843 |
gttatagcgaaattatcagacatagcaaaccttgttctgatgataaacaacacaaaaactgtcatctgggaaagctttgatcatcccacagacaccttgc |
36403942 |
T |
|
| Q |
131 |
ttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaaggtgccttcacgtt |
230 |
Q |
| |
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||||||||| || | | || ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| | |
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| T |
36403943 |
ttccatatctaaagatagggtttaatagaaaaactaatcaaagctggttccttcaatcctggaagacagatgatgaccctggaaaaggtgcgttcacggt |
36404042 |
T |
|
| Q |
231 |
gaaattcagcaccgttggtaaaactcagctttttatgtacaaacataaccttcc |
284 |
Q |
| |
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| ||||||||||| |||||||| ||||| | ||||||||||| ||||||||||| |
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| T |
36404043 |
ggaattcagcaccattggtaaacctcagttgtttatgtacaaccataaccttcc |
36404096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 31 - 257
Target Start/End: Original strand, 36387126 - 36387353
Alignment:
| Q |
31 |
gttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatcccacggacacttggc |
130 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||| ||||||||||||||||| |||| || ||||| | || |
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|
| T |
36387126 |
gttatagctcaactatcggatatagcaaaccttgttttgatgataaacaacaccaaaactgtattatgggaaagctttgatcatccaacagacaccttgc |
36387225 |
T |
|
| Q |
131 |
ttccatatcaaagggttggttttgat-agaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaaggtgccttcacgt |
229 |
Q |
| |
|
||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| ||||| |
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|
| T |
36387226 |
ttccatatctaaggcttggttttgataaaaaaaactaatcaaagctggttccttcaatcctggaagacggatgatgaccctggaaatggtgcattcacag |
36387325 |
T |
|
| Q |
230 |
tgaaattcagcaccgttggtaaaactca |
257 |
Q |
| |
|
|||||||||||||| |||| ||| |||| |
|
|
| T |
36387326 |
tgaaattcagcaccattggcaaacctca |
36387353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 57 - 284
Target Start/End: Original strand, 36396936 - 36397163
Alignment:
| Q |
57 |
aaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatcccacggacacttggcttccatatcaaagggttggttttgat |
156 |
Q |
| |
|
|||| ||||| ||||| |||||| || ||||||||||| ||||||||||||||| ||||||| ||||| | ||||||||||||||| ||||||||||| |
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|
| T |
36396936 |
aaacattgttctgatgataaacaacacaaaaactgtcatttgggaaagctttgatcatcccacagacaccttccttccatatcaaaggtttggttttgat |
36397035 |
T |
|
| Q |
157 |
agaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaaggtgccttcacgttgaaattcagcaccgttggtaaaactc |
256 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||| | | |||| | ||| |
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| T |
36397036 |
agaaaaactaatcaaagttggccccttcaatcctggaagacagaagatgaccctggaaaaggtgcattcacggtgaaattcagcagcataggtatacctc |
36397135 |
T |
|
| Q |
257 |
agctttttatgtacaaacataaccttcc |
284 |
Q |
| |
|
|| | ||||||||||| ||||||||||| |
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|
| T |
36397136 |
agttgtttatgtacaaccataaccttcc |
36397163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 36411144 - 36411398
Alignment:
| Q |
18 |
aaatagcaccgacgttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatccc |
117 |
Q |
| |
|
||||| |||| | |||||||||||||||| ||||||||||||| ||||| ||| ||||||| ||| |||||| ||| ||||||||||||||| ||||| |
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|
| T |
36411144 |
aaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctgggaaagctttgatcatccc |
36411243 |
T |
|
| Q |
118 |
acggacacttggcttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaag |
217 |
Q |
| |
|
|| ||||| |||||| ||||||| | |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| || ||||||||||||| |
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|
| T |
36411244 |
acagacacaatgcttccgtatcaaaagattggttttgatagaaaaattaatcaaagttgggtccttcaatcctggaagacagatgatgaccctggaaaag |
36411343 |
T |
|
| Q |
218 |
gtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaa |
272 |
Q |
| |
|
|||| |||||| |||||||||||||| |||| ||| | || | ||||||||||| |
|
|
| T |
36411344 |
gtgcgttcacggtgaaattcagcaccattggcaaaccacaattgtttatgtacaa |
36411398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 36416475 - 36416729
Alignment:
| Q |
18 |
aaatagcaccgacgttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatccc |
117 |
Q |
| |
|
||||| |||| | |||||||||||||||| ||||||||||||| ||||| ||| ||||||| ||| |||||| ||| ||||||||||||||| ||||| |
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|
| T |
36416475 |
aaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctgggaaagctttgatcatccc |
36416574 |
T |
|
| Q |
118 |
acggacacttggcttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaag |
217 |
Q |
| |
|
|| ||||| |||||| ||||||| | |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| || ||||||||||||| |
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|
| T |
36416575 |
acagacacaatgcttccgtatcaaaagattggttttgatagaaaaattaatcaaagttgggtccttcaatcctggaagacagatgatgaccctggaaaag |
36416674 |
T |
|
| Q |
218 |
gtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaa |
272 |
Q |
| |
|
|||| |||||| |||||||||||||| |||| ||| | || | ||||||||||| |
|
|
| T |
36416675 |
gtgcgttcacggtgaaattcagcaccattggcaaaccacaattgtttatgtacaa |
36416729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 36373155 - 36373409
Alignment:
| Q |
18 |
aaatagcaccgacgttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatccc |
117 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| ||| |||| ||||| ||||| |||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
36373155 |
aaatagcaccagggttatagctcaattatcggatgtagcaaaccttgttctgatgataaacaacaccaaaactgtattatgggaaagctttgatcatcca |
36373254 |
T |
|
| Q |
118 |
acggacacttggcttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaag |
217 |
Q |
| |
|
|| ||||| | ||||||||||| || | |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |
|
|
| T |
36373255 |
acagacaccttgcttccatatctaaagattgggtttaatagaaaaactaatcaaagctggttccttcaatcctggaagacagatgatgaccctggaaatg |
36373354 |
T |
|
| Q |
218 |
gtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaa |
272 |
Q |
| |
|
|||| ||||| ||||||||| || | ||| ||| ||||| | ||||||||||| |
|
|
| T |
36373355 |
gtgcattcacagtgaaattcaacagcattgtcaaacctcagttgtttatgtacaa |
36373409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 36425310 - 36425564
Alignment:
| Q |
18 |
aaatagcaccgacgttatagctcaactatcggatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatgggaaagctttgattatccc |
117 |
Q |
| |
|
||||| |||| | |||||||||||||||| ||||||||||||| ||||| ||| ||||||| ||| |||||| ||| ||||||||||| ||| ||||| |
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|
| T |
36425310 |
aaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctgggaaagcttggatcatccc |
36425409 |
T |
|
| Q |
118 |
acggacacttggcttccatatcaaagggttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagaggacgaccctggaaaag |
217 |
Q |
| |
|
|| ||||| |||||||||| || | |||||||||||||||||| ||||||||| |||||||||||||| |||||||| || || ||||||||||||| |
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|
| T |
36425410 |
acagacacaatgcttccatatataaagcttggttttgatagaaaaattaatcaaagttggttccttcaatcatggaagaccgacgatgaccctggaaaag |
36425509 |
T |
|
| Q |
218 |
gtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaa |
272 |
Q |
| |
|
|||| ||||| ||||||||||||| |||| ||| | ||| | ||||||||||| |
|
|
| T |
36425510 |
gtgcgttcaccgtgaaattcagcacaattggcaaaccgcagttgtttatgtacaa |
36425564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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