View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1297_high_54 (Length: 312)
Name: NF1297_high_54
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_54 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 54 - 305
Target Start/End: Original strand, 49206978 - 49207229
Alignment:
| Q |
54 |
gcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgtttccaagtgcattgagaagtg |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49206978 |
gcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgtttccaagtgcattgagaagtg |
49207077 |
T |
|
| Q |
154 |
tacttacatacgctccttgagcattcccaagtgtcataatcccctctgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcata |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49207078 |
tacttacatacgctccttgagcattcccaagtgtcataatcccctctgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcata |
49207177 |
T |
|
| Q |
254 |
aaatgtggaatctgccaatgctttttgcgcttctgcctctgccttcatctca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49207178 |
aaatgtggaatctgccaatgctttttgcgcttctgcctctgccttcttctca |
49207229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 54 - 305
Target Start/End: Original strand, 49211552 - 49211803
Alignment:
| Q |
54 |
gcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgtttccaagtgcattgagaagtg |
153 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |
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|
| T |
49211552 |
gcctcagcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttactgctgtatagttgtttccaagtgcattcagaagtg |
49211651 |
T |
|
| Q |
154 |
tacttacatacgctccttgagcattcccaagtgtcataatcccctctgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcata |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
49211652 |
tacttacatacgctccttgagcattcccaagtgtcacaatcccctctgcctcttttttctttgcgtacagctctgcttcagcttcttgcttgcgagcata |
49211751 |
T |
|
| Q |
254 |
aaatgtggaatctgccaatgctttttgcgcttctgcctctgccttcatctca |
305 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
49211752 |
aaatgtggaatctgccaatgctttttgtgcttctgcctctgccttcttctca |
49211803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 54 - 305
Target Start/End: Original strand, 49202023 - 49202274
Alignment:
| Q |
54 |
gcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgtttccaagtgcattgagaagtg |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
49202023 |
gcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgtttccaagtgcattcagaagtg |
49202122 |
T |
|
| Q |
154 |
tacttacatacgctccttgagcattcccaagtgtcataatcccctctgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcata |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
49202123 |
tacttacatacgctccttgagcattcccaagtgtcacaatcccctctgcctcttttttctttgcgtatagctctgcttcggcttcttgcttgcaagcata |
49202222 |
T |
|
| Q |
254 |
aaatgtggaatctgccaatgctttttgcgcttctgcctctgccttcatctca |
305 |
Q |
| |
|
|||||| | |||||| | ||||| || |||||||||||||||||| ||||| |
|
|
| T |
49202223 |
aaatgttgcatctgctgacgctttctgtgcttctgcctctgccttcttctca |
49202274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 54 - 305
Target Start/End: Original strand, 49187043 - 49187294
Alignment:
| Q |
54 |
gcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgtttccaagtgcattgagaagtg |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49187043 |
gcctcggcattaatcttagcaatctcttgaaacatgtcaccatttatcatcaagtaatcccttacagctgtgtagtcgtttccaagtgcattgagaagtg |
49187142 |
T |
|
| Q |
154 |
tacttacatacgctccttgagcattcccaagtgtcataatcccctctgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcata |
253 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||| ||| ||||||||||| ||||||||||| || ||||||||||||||| |||| |||| |||||| |
|
|
| T |
49187143 |
tacttacatacgctccttgagcttgtccaagtgtcacaattccctctgcctcctttttctttgcataaagctctgcttcagctgcttgtttgctagcata |
49187242 |
T |
|
| Q |
254 |
aaatgtggaatctgccaatgctttttgcgcttctgcctctgccttcatctca |
305 |
Q |
| |
|
|||||| | ||||||| | ||||| || |||||||||||||||||| ||||| |
|
|
| T |
49187243 |
aaatgttgcatctgccgacgctttctgtgcttctgcctctgccttcttctca |
49187294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 54 - 305
Target Start/End: Original strand, 49190734 - 49190985
Alignment:
| Q |
54 |
gcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgtttccaagtgcattgagaagtg |
153 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49190734 |
gcctcagcattaatcttagcgatctcttgaaacatgccaccatttatcatcaagaaatcccttacagcagtgtagttgtttccaagtgcattgagaagtg |
49190833 |
T |
|
| Q |
154 |
tacttacatacgctccttgagcattcccaagtgtcataatcccctctgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcata |
253 |
Q |
| |
|
||||| |||| | |||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||||||||||||||||| ||||| |||||||||| |
|
|
| T |
49190834 |
cacttagatacaccccttgagcattcccaagtgtcacaattccctctgcctcctttttctttgcatatagctctgcttcagctgcttgcgtgcgagcata |
49190933 |
T |
|
| Q |
254 |
aaatgtggaatctgccaatgctttttgcgcttctgcctctgccttcatctca |
305 |
Q |
| |
|
|||||| | ||||| |||||||| || |||||||||||||||||| ||||| |
|
|
| T |
49190934 |
aaatgttgcgtctgctaatgctttctgtgcttctgcctctgccttcttctca |
49190985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 54 - 305
Target Start/End: Complemental strand, 32593551 - 32593300
Alignment:
| Q |
54 |
gcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgtttccaagtgcattgagaagtg |
153 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32593551 |
gcctcagcattgatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgtttccaagtgcattgagaagtg |
32593452 |
T |
|
| Q |
154 |
tacttacatacgctccttgagcattcccaagtgtcataatcccctctgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcata |
253 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
32593451 |
tacttacatacactccttgagcattcccaagtgtcacaatcccttctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcata |
32593352 |
T |
|
| Q |
254 |
aaatgtggaatctgccaatgctttttgcgcttctgcctctgccttcatctca |
305 |
Q |
| |
|
|||||| | ||||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
32593351 |
aaatgttgcatctgccaatgctttctgtgcttctgcctctgccttcttctca |
32593300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 54 - 304
Target Start/End: Original strand, 51823740 - 51823990
Alignment:
| Q |
54 |
gcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgtttccaagtgcattgagaagtg |
153 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51823740 |
gcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgtttccaagtgcattgagaagtg |
51823839 |
T |
|
| Q |
154 |
tacttacatacgctccttgagcattcccaagtgtcataatcccctctgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcata |
253 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
51823840 |
tacttacatacgctccttgagcatttccaagtgtcacaatcccctctgcctcttttttctttgcgtatagatctgcttcagctgcttgcttgcacgcata |
51823939 |
T |
|
| Q |
254 |
aaatgtggaatctgccaatgctttttgcgcttctgcctctgccttcatctc |
304 |
Q |
| |
|
|||||| | ||||||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
51823940 |
aaatgttgcatctgccaatgctttctgtgcttctgcctctgccttcttctc |
51823990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 54 - 305
Target Start/End: Original strand, 31526850 - 31527101
Alignment:
| Q |
54 |
gcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgtttccaagtgcattgagaagtg |
153 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31526850 |
gcctcagcattaatcttagccatctcttgaaacatgccaccatttatcatcaagtaatcccttagagctgtgtagtcgtttccaagtgcattgagaagtg |
31526949 |
T |
|
| Q |
154 |
tacttacatacgctccttgagcattcccaagtgtcataatcccctctgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcata |
253 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||| ||||| |
|
|
| T |
31526950 |
tacttacatacactccttgagcattcccaagtgtcacaatcccctctgcctcttttttctttgcatatagctccgcttcggctgcttgcttgcgcgcata |
31527049 |
T |
|
| Q |
254 |
aaatgtggaatctgccaatgctttttgcgcttctgcctctgccttcatctca |
305 |
Q |
| |
|
|||||| | ||||| ||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
31527050 |
aaatgttgcatctgacaatgctttctgtgcttctgcctctgccttcttctca |
31527101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 54 - 305
Target Start/End: Original strand, 37030189 - 37030440
Alignment:
| Q |
54 |
gcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgtttccaagtgcattgagaagtg |
153 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
37030189 |
gcctcggcgttaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatccctcacagctgtgtagtcgtttccaagtgcattaagaagtt |
37030288 |
T |
|
| Q |
154 |
tacttacatacgctccttgagcattcccaagtgtcataatcccctctgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcata |
253 |
Q |
| |
|
||||||||||| | |||||||| | |||| ||||| ||| ||||||||||| ||||||||||| || ||||||||||||||| |||| |||| |||||| |
|
|
| T |
37030289 |
tacttacatacaccccttgagcttgtccaactgtcacaattccctctgcctcctttttctttgcataaagctctgcttcagctgcttgtttgctagcata |
37030388 |
T |
|
| Q |
254 |
aaatgtggaatctgccaatgctttttgcgcttctgcctctgccttcatctca |
305 |
Q |
| |
|
|||||| | ||||||| ||||||| || |||||||||||||||||| ||||| |
|
|
| T |
37030389 |
aaatgttgcatctgccgatgctttctgtgcttctgcctctgccttcttctca |
37030440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 53 - 305
Target Start/End: Original strand, 26756020 - 26756272
Alignment:
| Q |
53 |
agcctcggcattaatcttagcaatctcttgaaacatgccaccatttatcatcaagtaatcccttacagctgtgtagttgtttccaagtgcattgagaagt |
152 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||||| || | ||||||||| |||||||| |
|
|
| T |
26756020 |
agcctcagcattaatcttcgcaatatctcgaaacatgccaccatttatcatcaagtagtcccttacagctgtataatcacctccaagtgcgttgagaagg |
26756119 |
T |
|
| Q |
153 |
gtacttacatacgctccttgagcattcccaagtgtcataatcccctctgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcat |
252 |
Q |
| |
|
||||||||| || | |||||| ||||||||||||||| |||||||| ||||| || |||||||| |||||||||||||| ||| |||| || ||||||| |
|
|
| T |
26756120 |
gtacttacacacaccccttgaccattcccaagtgtcacgatcccctccgcctccttcttctttgcatatagctctgcttcggctgcttgtttacgagcat |
26756219 |
T |
|
| Q |
253 |
aaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttcatctca |
305 |
Q |
| |
|
||||||| | || |||||||||| | || ||||||||||||| |||| ||||| |
|
|
| T |
26756220 |
aaaatgttgcatttgccaatgctatctgtgcttctgcctctgtcttcttctca |
26756272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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