View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_high_65 (Length: 299)

Name: NF1297_high_65
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_high_65
NF1297_high_65
[»] chr5 (5 HSPs)
chr5 (30-299)||(41722878-41723147)
chr5 (32-299)||(41718154-41718421)
chr5 (266-299)||(34352226-34352259)
chr5 (266-299)||(34359934-34359967)
chr5 (266-299)||(29585607-29585640)
[»] chr4 (8 HSPs)
chr4 (198-299)||(48702127-48702228)
chr4 (198-299)||(48697438-48697539)
chr4 (198-296)||(30945803-30945901)
chr4 (198-288)||(30950517-30950607)
chr4 (267-299)||(24520331-24520363)
chr4 (268-299)||(42265883-42265914)
chr4 (268-299)||(42270602-42270633)
chr4 (82-175)||(48781266-48781360)
[»] chr2 (1 HSPs)
chr2 (198-299)||(5198961-5199062)
[»] chr3 (3 HSPs)
chr3 (198-299)||(2817557-2817658)
chr3 (266-299)||(5818819-5818852)
chr3 (267-299)||(5823581-5823613)
[»] chr6 (4 HSPs)
chr6 (198-296)||(27879036-27879134)
chr6 (266-299)||(26976437-26976470)
chr6 (267-299)||(1234680-1234712)
chr6 (268-299)||(27874296-27874327)
[»] chr8 (2 HSPs)
chr8 (267-299)||(9439678-9439710)
chr8 (267-299)||(9444398-9444430)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 30 - 299
Target Start/End: Original strand, 41722878 - 41723147
Alignment:
Q  30 attgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaattta 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41722878 attgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaattta 41722977  T
Q  130 ccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722978 ccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttac 41723077  T
Q  230 ggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723078 ggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagta 41723147  T

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Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 32 - 299
Target Start/End: Original strand, 41718154 - 41718421
Alignment:
Q  32 tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaatttacc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41718154 tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaatttacc 41718253  T
Q  132 attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718254 attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg 41718353  T
Q  232 tcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718354 tcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagta 41718421  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 34352226 - 34352259
Alignment:
Q  266 tcatcccaaatcagtaacaacacaagaacaagta 299  Q
    ||||||||||||||||||||||||||||||||||    
T  34352226 tcatcccaaatcagtaacaacacaagaacaagta 34352259  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 34359934 - 34359967
Alignment:
Q  266 tcatcccaaatcagtaacaacacaagaacaagta 299  Q
    ||||||||||||||||||||||||||||||||||    
T  34359934 tcatcccaaatcagtaacaacacaagaacaagta 34359967  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 29585640 - 29585607
Alignment:
Q  266 tcatcccaaatcagtaacaacacaagaacaagta 299  Q
    ||||||||||||||||||||||||| ||||||||    
T  29585640 tcatcccaaatcagtaacaacacaacaacaagta 29585607  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 48702228 - 48702127
Alignment:
Q  198 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 297  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48702228 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 48702129  T
Q  298 ta 299  Q
    ||    
T  48702128 ta 48702127  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 48697539 - 48697438
Alignment:
Q  198 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 297  Q
    ||||||| || |||||| ||||||||| || |  |  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  48697539 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcattattctactcatcccaaatcagtaacaacacaagaacaag 48697440  T
Q  298 ta 299  Q
    ||    
T  48697439 ta 48697438  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 30945901 - 30945803
Alignment:
Q  198 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa 296  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  30945901 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaa 30945803  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 30950607 - 30950517
Alignment:
Q  198 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacac 288  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30950607 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacac 30950517  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 24520363 - 24520331
Alignment:
Q  267 catcccaaatcagtaacaacacaagaacaagta 299  Q
    |||||||||||||||||||||||||||||||||    
T  24520363 catcccaaatcagtaacaacacaagaacaagta 24520331  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 299
Target Start/End: Original strand, 42265883 - 42265914
Alignment:
Q  268 atcccaaatcagtaacaacacaagaacaagta 299  Q
    ||||||||||||||||||||||||||||||||    
T  42265883 atcccaaatcagtaacaacacaagaacaagta 42265914  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 299
Target Start/End: Original strand, 42270602 - 42270633
Alignment:
Q  268 atcccaaatcagtaacaacacaagaacaagta 299  Q
    ||||||||||||||||||||||||||||||||    
T  42270602 atcccaaatcagtaacaacacaagaacaagta 42270633  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 48781266 - 48781360
Alignment:
Q  82 ttttcacatggcagtaatacatgtttgacaaaagggc--tttgcaatttaccattcagattttcggtgccaacattgtcaacataaattggttggc 175  Q
    ||||||||||||||||| |  |||||||| |||||||  ||||| ||||| |||| | ||||| |||||  | ||| |||||||||||||||||||    
T  48781266 ttttcacatggcagtaaaaggtgtttgacgaaagggctttttgc-atttaacatttatatttttggtgcatatattttcaacataaattggttggc 48781360  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 5199062 - 5198961
Alignment:
Q  198 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 297  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5199062 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 5198963  T
Q  298 ta 299  Q
    ||    
T  5198962 ta 5198961  T

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Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 2817658 - 2817557
Alignment:
Q  198 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 297  Q
    ||||||| || |||||| ||||||||| || |  |  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817658 ataaatgcaattggttggggcatggctctttcactagtatacatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag 2817559  T
Q  298 ta 299  Q
    ||    
T  2817558 ta 2817557  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 5818852 - 5818819
Alignment:
Q  266 tcatcccaaatcagtaacaacacaagaacaagta 299  Q
    ||||||||||||||||||||||||||||||||||    
T  5818852 tcatcccaaatcagtaacaacacaagaacaagta 5818819  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 5823613 - 5823581
Alignment:
Q  267 catcccaaatcagtaacaacacaagaacaagta 299  Q
    |||||||||||||||||||||||||||||||||    
T  5823613 catcccaaatcagtaacaacacaagaacaagta 5823581  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 296
Target Start/End: Complemental strand, 27879134 - 27879036
Alignment:
Q  198 ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa 296  Q
    ||||||| || |||||| ||||||||| || |  |  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  27879134 ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaa 27879036  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 26976470 - 26976437
Alignment:
Q  266 tcatcccaaatcagtaacaacacaagaacaagta 299  Q
    ||||||||||||||||||||||||||||||||||    
T  26976470 tcatcccaaatcagtaacaacacaagaacaagta 26976437  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 1234680 - 1234712
Alignment:
Q  267 catcccaaatcagtaacaacacaagaacaagta 299  Q
    |||||||||||||||||||||||||||||||||    
T  1234680 catcccaaatcagtaacaacacaagaacaagta 1234712  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 299
Target Start/End: Complemental strand, 27874327 - 27874296
Alignment:
Q  268 atcccaaatcagtaacaacacaagaacaagta 299  Q
    ||||||||||||||||||||||||||||||||    
T  27874327 atcccaaatcagtaacaacacaagaacaagta 27874296  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 9439710 - 9439678
Alignment:
Q  267 catcccaaatcagtaacaacacaagaacaagta 299  Q
    |||||||||||||||||||||||||||||||||    
T  9439710 catcccaaatcagtaacaacacaagaacaagta 9439678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 9444430 - 9444398
Alignment:
Q  267 catcccaaatcagtaacaacacaagaacaagta 299  Q
    |||||||||||||||||||||||||||||||||    
T  9444430 catcccaaatcagtaacaacacaagaacaagta 9444398  T

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