View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1297_high_69 (Length: 292)
Name: NF1297_high_69
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_69 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 30 - 285
Target Start/End: Original strand, 34489084 - 34489339
Alignment:
| Q |
30 |
atgaatccattatcaaccttcagatacagaatcttccaagcaaccaccacaatctcatcattctcaccttttttcctcttcaaccaaaaacgatggaaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34489084 |
atgaatccattatcaaccttcagatacagaatcttccaagcaaccaccacaatctcatcattctcaccttttttcctcttcaaccaaaaacgatggaaaa |
34489183 |
T |
|
| Q |
130 |
aacccaccatttccgcacaaacccgtttagaagaccgaataagagacacccactttgacaaattaacaacccacttcaaaaaactcagccttgttctcaa |
229 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34489184 |
aacccaccatttcagcacaaacccgtttagaagaccgaataagagacacccactttgacaaattaacaacccacttcaaaaaactcagccttgttctcaa |
34489283 |
T |
|
| Q |
230 |
aacccgcaacctcatatcaaatcgaaaacgtggttcttttgtctctcttcatctca |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34489284 |
aacccgcaacctcatatcaaatcgaaaacgtggttcttttgtctctcttcaactca |
34489339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University