View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1297_high_7 (Length: 586)
Name: NF1297_high_7
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_7 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 9 - 557
Target Start/End: Complemental strand, 25467483 - 25466935
Alignment:
| Q |
9 |
atcatagggcacataattgtttcataatatcatctatatccattcttttaaatttgtcattcatacatgcaatatagttcctatgtaaacacttcagttg |
108 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25467483 |
atcaaagggcacataattgtttcataatatcatctatatccattcttttaaatttgtcattcatacatgcaatatagtttctatgtaaacacttcagttg |
25467384 |
T |
|
| Q |
109 |
ataagaaattagcaacatacctcttgaagtgtttgaaattcctgaagccaaccaatcccttcatttgtccttttcatcactcctgtgctctcatctttat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25467383 |
ataagaaattagcaacatacctcttgaagtgtttgaaattcctgaagccaaccaatcccttcatttgtccttttcatcactcctgtgctctcatctttat |
25467284 |
T |
|
| Q |
209 |
caatttttgttagcacatccttttccttgttttgaagatcatcccattttttgttcagtgattccagattttcttgtaatttataaatataggcagcttg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25467283 |
caatttttgttagcacatccttttccttgttttgaagatcatcccattttttgttcagtgattccagattttcttgtaatttataaatataggcagcttg |
25467184 |
T |
|
| Q |
309 |
tgcatttgtgcaactgaacaaacattttgcaacttcccaaattactcccaacgcttccattgttttatatactttgattctcaaaatattaatcaagact |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25467183 |
tgcatttgtgcaactgaacaaacattttgcaacttcccaaattactcccaacgcttccattgttttatatactttgattctcaaaatattaatcaagact |
25467084 |
T |
|
| Q |
409 |
tgcatgaaaaaacaaaatattacagttagactttatatttattttttactcgtacataaatatttttgaacaatgaaaatggtatttaaacatatattag |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25467083 |
tgcatgaaaaaacaaaatattacagttagactttatatttattttttactcgtacataaatatttttgaacaatgaaaatggtatttaaacatatattag |
25466984 |
T |
|
| Q |
509 |
ttcttacctctgatgatactatgctttagtaatgttgtgtgattattta |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25466983 |
ttcttacctctgatgatactatgctttagtaatgttgtgtgattattta |
25466935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 125 - 555
Target Start/End: Original strand, 36216646 - 36217076
Alignment:
| Q |
125 |
atacctcttgaagtgtttgaaattcctgaagccaaccaatcccttcatttgtccttttcatcactcctgtgctctcatctttatcaatttttgttagcac |
224 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| || ||||||||| ||| |||| |
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|
| T |
36216646 |
atacctcttgaagcttttgaaattcctgaagccaaccaattccttcattagtccttttcttcactcctgtgctctcagctctatcaatttctgtctgcac |
36216745 |
T |
|
| Q |
225 |
atccttttccttgttttgaagatcatcccattttttgttcagtgattccagattttcttgtaatttataaatataggcagcttgtgcatttgtgcaactg |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || | ||||||| |||||||||||||||||||||||||||| |
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|
| T |
36216746 |
atccttttccttgttttgaagatcatcccatttttctttcagtgattccagattctcctgcagcttataaacataggcagcttgtgcatttgtgcaactg |
36216845 |
T |
|
| Q |
325 |
aacaaacattttgcaacttcccaaattactcccaacgcttccattgttttatatactttgattctcaaaatattaatcaagacttgcatgaa--aaaaca |
422 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||| |||| |
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|
| T |
36216846 |
aacaaactttttgcaacttcccaaattattcccaacgcttccatggttttatatactttgattctcaaaatattaatcaaggcttgtaagaaagaaaaac |
36216945 |
T |
|
| Q |
423 |
aaatattacagttagacttt-atatttattttttactcgtacataaatatttttgaacaatgaaaatggtatttaaacatatattagttcttacctctga |
521 |
Q |
| |
|
|||| | ||||||||||||| | |||| || || || ||||||||||||| |||||| ||||||| |||||||| |||| |||||||||||||||| |
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|
| T |
36216946 |
aaatctcacagttagactttcgtttttacttattgct----cataaatattttttaacaataaaaatgggatttaaacgtatactagttcttacctctga |
36217041 |
T |
|
| Q |
522 |
tgatactatg-ctttagtaatgttgtgtgattatt |
555 |
Q |
| |
|
| ||| |||| |||||||||| ||||||||||||| |
|
|
| T |
36217042 |
ttataatatgcctttagtaatcttgtgtgattatt |
36217076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 110 - 368
Target Start/End: Original strand, 36234567 - 36234825
Alignment:
| Q |
110 |
taagaaattagcaacatacctcttgaagtgtttgaaattcctgaagccaaccaatcccttcatttgtccttttcatcactcctgtgctctcatctttatc |
209 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
36234567 |
taagaaattagaaagatacctcttgaagtttttgaaattcctgaagccaaccaatcccttcatatgtccttttcatcactcctgtgctctcatctttatc |
36234666 |
T |
|
| Q |
210 |
aatttttgttagcacatccttttccttgttttgaagatcatcccattttttgttcagtgattccagattttcttgtaatttataaatataggcagcttgt |
309 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||| |||| |||||||| |
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|
| T |
36234667 |
aatttttgttaccacatccttttgcttgttttgaagatcatcccattttttgttcaacaattccagattctcttgcagcttataaacatagacagcttgt |
36234766 |
T |
|
| Q |
310 |
gcatttgtgcaactgaacaaacattttgcaacttcccaaattactcccaacgcttccat |
368 |
Q |
| |
|
||||| | ||| | |||||||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
36234767 |
gcattagcgcacccgaacaaacttttcgcaacttcccaaattactcccaacgcttccat |
36234825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 35901055 - 35900957
Alignment:
| Q |
17 |
gcacataattgtttcataatatcatctatatccattcttttaaatttgtcat----tcatacatgcaatatagttcctatgtaaacacttcagttgata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| |||||||| |||||||||||||| |
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|
| T |
35901055 |
gcacataattgtttcataatatcatctatatccattcttttaaatttgtcattcattcatacatgcaaaacagtttctatgtaagcacttcagttgata |
35900957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 36234427 - 36234520
Alignment:
| Q |
14 |
agggcacataattgtttcataatatcatctatatccattcttttaaatttgtcattcatacatgcaatatagttcctatgtaaacacttcagtt |
107 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
36234427 |
agggcacataaatgtttcataatatcatctatatccattttttacaatttgtcattcatacatgcaatatagtttcaatgtaagcacttcagtt |
36234520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 446 - 531
Target Start/End: Original strand, 36234829 - 36234914
Alignment:
| Q |
446 |
tttattttttactcgtacataaatatttttgaacaatgaaaatggtatttaaacatatattagttcttacctctgatgatactatg |
531 |
Q |
| |
|
||||||| || ||| || ||||||||||||||||||| ||||| | ||||||||||||| |||| |||||||| ||||||||||| |
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|
| T |
36234829 |
tttatttatttctcatatataaatatttttgaacaataaaaataggatttaaacatatacaagtttttacctcttatgatactatg |
36234914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 541
Target Start/End: Complemental strand, 35900887 - 35900826
Alignment:
| Q |
483 |
gaaaatggtatttaaacatatattagttc--ttacctctgatgatactatg-ctttagtaat |
541 |
Q |
| |
|
|||||| |||||||||||||||||| ||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
35900887 |
gaaaattgtatttaaacatatattaattcttttacctctcatgatactatgcctttagtaat |
35900826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 125 - 555
Target Start/End: Original strand, 9770291 - 9770713
Alignment:
| Q |
125 |
atacctcttgaagtgtttgaaattcctgaagccaaccaatcccttcatttgtccttttcatcactcctgtgctctcatctttatcaatttttgttagcac |
224 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| | |||| ||||||||||||||||||| |||||||||| || | ||||||| ||||||||| |
|
|
| T |
9770291 |
atacctcttgaagtttttgaaattcttgaagccaactggccacttcctttgtccttttcatcactcttgtgctctcagctctttcaatttctgttagcac |
9770390 |
T |
|
| Q |
225 |
atccttttccttgttttgaagatcatcccattttttgttcagtgattccagattttcttgtaatttataaatataggcagcttgtgcatttgtgcaactg |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || || | ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9770391 |
gtccttttccttgttttgaagatcatcccatattttgttcagtgattccagattctcctgcagcttataaacataggcagcttgtgcatttgtgcaactc |
9770490 |
T |
|
| Q |
325 |
aacaaacattttgcaacttcccaaattactcccaacgcttccattgttttatatactttgattctcaaaatattaatcaagacttgcatgaaaaaacaaa |
424 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||||| || |
|
|
| T |
9770491 |
aacaaacttttcgcaacttcccaaattactcccaacgcttcca---------------tgattctcaaaatattaattaaggcttgcaagaaaaaataat |
9770575 |
T |
|
| Q |
425 |
atattacagttagactttata-tttattttttactcgtacataaatatttttgaacaatgaaaa-----tggtatttaaacatatattagttcttacctc |
518 |
Q |
| |
|
|| | || ||||||||||| | ||||||| || ||| || |||||||||||||||||| |||| || ||||||||||| | |||| |||||||| |
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|
| T |
9770576 |
atctcacggttagactttacattttatttattgctcatatataaatatttttgaacaaaaaaaaaaaacagggatttaaacatacactagtccttacctc |
9770675 |
T |
|
| Q |
519 |
tgatgatactatgc-tttagtaatgttgtgtgattatt |
555 |
Q |
| |
|
|||||||| ||||| ||||||||| || |||||||||| |
|
|
| T |
9770676 |
tgatgataatatgcgtttagtaatcttctgtgattatt |
9770713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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