View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1297_high_74 (Length: 282)
Name: NF1297_high_74
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_74 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 4146042 - 4145780
Alignment:
| Q |
1 |
cttcataggtaataaaataatgcaacttatgatttttccatgtaattcccattgcttagcacgttgctaaagtcaactaattgcaaactcaatagagcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4146042 |
cttcataggtaataaaataatgcaacttatgatttttccatgtaattcccattgcttagcacgttgctaaagtcaactaattgcaaactcaatagagcat |
4145943 |
T |
|
| Q |
101 |
ctcaacgactccacaattcaacaacttcttccacgtgaatttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcctagtattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145942 |
ctcaacgactccacaattcaacaacttcttccacgtgaatttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcctagtattc |
4145843 |
T |
|
| Q |
201 |
ctcaaaaaacaccattttgttacatgttcatggcttttctaagtcataacaaaaaccacttgt |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145842 |
ctcaaaaaacaccattttgttacatgttcatggcttttctaagtcataacaaaaaccacttgt |
4145780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 4124568 - 4124500
Alignment:
| Q |
140 |
tttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcctagtattcctcaaaaaa |
209 |
Q |
| |
|
||||| |||||| ||| |||||||||||| |||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
4124568 |
tttgaataggaatatgttacaaattacaaa-ctcatcaaaccaaactaagttctagtattcctcaaaaaa |
4124500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 4153885 - 4153845
Alignment:
| Q |
171 |
ctcatcaaaccaaattaaatcctagtattcctcaaaaaaca |
211 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
4153885 |
ctcattaaaccaaactaaatcctagtattcctcaaaaaaca |
4153845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 211
Target Start/End: Complemental strand, 4135160 - 4135044
Alignment:
| Q |
99 |
atctcaacgactccacaattcaacaa---cttcttccacgtgaa--tttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcct |
193 |
Q |
| |
|
||||||| ||| |||||||||||||| | |||||||| ||| |||||||||||||||| |||||||||||| ||||| || || | ||| | || |
|
|
| T |
4135160 |
atctcaatgacgccacaattcaacaataacatcttccacatgatagtttgattaggaacatgttacaaattacaaa-ctcataaagcctatctaagttct |
4135062 |
T |
|
| Q |
194 |
agtattcctcaaaaaaca |
211 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4135061 |
agtattcctcaaaaaaca |
4135044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University