View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_76 (Length: 279)
Name: NF1297_high_76
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_76 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 43759474 - 43759715
Alignment:
| Q |
29 |
atgaaggttcaaagtggacacctataactcttagaccctttcatgtttcgactcatcgctttctttaaaacggcatttttatagctccagtactagttat |
128 |
Q |
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| T |
43759474 |
atgaaggttcaaagtggacacctataactcttagaccctttcatgtttcgactcatcgctttctttaaaacggcatttttatagctccagtactagttat |
43759573 |
T |
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| Q |
129 |
t-agttcttgtgcccatcacttctagggtactacccccaccaattactcctcctatttttattaggtatatgtaacgcccattagtcattaatgccactt |
227 |
Q |
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| T |
43759574 |
ttagttcttgtgcccatcacttctagggtactacccccaccaattactcctcctatttttattaggtatatgtaacgcccattagtcattaatgccactt |
43759673 |
T |
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| Q |
228 |
aaaaactaagctaggaagaatatctacctgtgtgtgtctgtg |
269 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43759674 |
aaaaactaagctaggaagaatatctacctgtgtgtgtgtgtg |
43759715 |
T |
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