View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_86 (Length: 265)
Name: NF1297_high_86
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_86 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6606924 - 6607159
Alignment:
| Q |
1 |
tttcttaagttaattcaaccataaactgcaaaagtcattttgaagtttagattgtgggagattttttacttagaaaatagcaacatgttgactctgttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6606924 |
tttcttaagttaattcaaccataaactgcaaaagtcattttgaagtttagattgtgggagattttttacttagaaaatagcaacatgttgactctgttcc |
6607023 |
T |
|
| Q |
101 |
actagtgtgtttatctctaccccttgactctattctacttgttgaaatattttccttgtagagtagaatgtggattttggttcctttggatcagtccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6607024 |
actagtgtgtttatctctaccccttgactctattctacttgttgaaatattttccttgtaaagtagaatgtggattttggttcctttggatcagtccatg |
6607123 |
T |
|
| Q |
201 |
aaaattcctcaatcgaaataaaattatggcttgaat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6607124 |
aaaattcctcaatcgaaataaaattatggcttgaat |
6607159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 2330762 - 2330997
Alignment:
| Q |
1 |
tttcttaagttaattcaaccataaactgcaaaagtcattttgaagtttagattgtgggagattttttacttagaaaatagcaacatgttgactctgttcc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2330762 |
tttcttaagttaattcaaccataaactgcaaaagtcattttgaagtttagattgtgggagattttttacttagaaaatagcaacatgttgactctgttcc |
2330861 |
T |
|
| Q |
101 |
actagtgtgtttatctctaccccttgactctattctacttgttgaaatattttccttgtagagtagaatgtggattttggttcctttggatcagtccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2330862 |
actagtgtgtttatctctaccccttgactctattctacttgttgaaatattttccttgtaaagtagaatgtggattttggttcctttggatcagtccatg |
2330961 |
T |
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| Q |
201 |
aaaattcctcaatcgaaataaaattatggcttgaat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2330962 |
aaaattcctcaatcgaaataaaattatggcttgaat |
2330997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 47776708 - 47776939
Alignment:
| Q |
1 |
tttcttaagttaattcaaccataaactgcaaaagtcattttgaagtttagattgtgggagattttttacttagaaaatagcaacatgttgactctgttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47776708 |
tttcttaagttaattcaaccataaactgcaaaagtcattttgaagtttagattgtgggagattttttacttagaaaatagcaacatgttgactctgttcc |
47776807 |
T |
|
| Q |
101 |
actagtgtgtttatctctaccccttgactctattctacttgttgaaatattttccttgtagagtagaatgtggattttggttcctttggatcagtccatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
47776808 |
actagtgtgtttatctctaccccttgactctattttacttgttgaaatattttccttgtaaagttgaatgtggattttggttcctttggatcagtccatg |
47776907 |
T |
|
| Q |
201 |
aaaattcctcaatcgaaataaaattatggctt |
232 |
Q |
| |
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|||||||||||||| ||||| ||||||||||| |
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|
| T |
47776908 |
aaaattcctcaatcaaaatacaattatggctt |
47776939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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