View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_high_89 (Length: 256)

Name: NF1297_high_89
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_high_89
NF1297_high_89
[»] chr2 (33 HSPs)
chr2 (146-220)||(14480800-14480874)
chr2 (14-141)||(14153218-14153345)
chr2 (147-220)||(14495194-14495267)
chr2 (157-228)||(14153404-14153475)
chr2 (48-141)||(14475734-14475827)
chr2 (146-220)||(14502680-14502754)
chr2 (19-148)||(14480915-14481044)
chr2 (156-228)||(14145422-14145494)
chr2 (146-215)||(14161725-14161794)
chr2 (91-146)||(14850220-14850275)
chr2 (91-146)||(15008215-15008270)
chr2 (91-139)||(14567765-14567813)
chr2 (91-146)||(14552726-14552781)
chr2 (88-141)||(14495092-14495145)
chr2 (88-141)||(14502579-14502632)
chr2 (14-141)||(14145237-14145364)
chr2 (161-220)||(14485754-14485813)
chr2 (91-146)||(14534374-14534429)
chr2 (91-144)||(15024152-15024205)
chr2 (91-139)||(14520530-14520578)
chr2 (98-146)||(15003764-15003812)
chr2 (98-146)||(15013629-15013677)
chr2 (98-146)||(15020124-15020172)
chr2 (98-146)||(31969549-31969597)
chr2 (91-146)||(14525288-14525343)
chr2 (91-146)||(14529149-14529204)
chr2 (91-146)||(14543375-14543430)
chr2 (95-144)||(14161839-14161888)
chr2 (146-199)||(14475633-14475686)
chr2 (100-141)||(14485650-14485691)
chr2 (99-138)||(14168641-14168680)
chr2 (98-139)||(14512706-14512747)
chr2 (105-141)||(14158383-14158419)
[»] chr1 (1 HSPs)
chr1 (95-141)||(24741545-24741591)
[»] chr7 (1 HSPs)
chr7 (186-215)||(9809445-9809474)
[»] chr4 (1 HSPs)
chr4 (112-140)||(49553799-49553827)


Alignment Details
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 14480874 - 14480800
Alignment:
Q  146 tgataaagttaatttagtgatgggcttttgggtctatcagttgggttgggatgctatggccattgccaaaacacc 220  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14480874 tgataaagttaatttagtgatgggcttttgggtcaatcagttgggttgggatgctatggccattgccaaaacacc 14480800  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 14153218 - 14153345
Alignment:
Q  14 aggacttggggtttaatcctgcaacaacaaattctggtgtagcattgcatgccaaactatctgttaacaaaagattgtgggaagagaaagttgatgcctt 113  Q
    |||| ||||||||||||||| ||| ||||| || ||||||||||||||||||||||  | |||| ||||| |   ||||| |||||||||||||||| ||    
T  14153218 aggatttggggtttaatccttcaaaaacaacttttggtgtagcattgcatgccaaaacaactgtaaacaataccctgtggaaagagaaagttgatgcttt 14153317  T
Q  114 taagaaatggggttggtctgatgaagat 141  Q
    ||||||||||||||||||||| ||||||    
T  14153318 taagaaatggggttggtctgaagaagat 14153345  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 14495194 - 14495267
Alignment:
Q  147 gataaagttaatttagtgatgggcttttgggtctatcagttgggttgggatgctatggccattgccaaaacacc 220  Q
    |||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14495194 gataaaattaatttagtgatgagcttttgggtcaatcagttgggttgggatgctatggccattgccaaaacacc 14495267  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 14153404 - 14153475
Alignment:
Q  157 atttagtgatgggcttttgggtctatcagttgggttgggatgctatggccattgccaaaacaccttatattt 228  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14153404 atttagtgatgaacttttgggtcaatcagttgggttgggatgctatggccattgccaaaacaccttatattt 14153475  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 14475827 - 14475734
Alignment:
Q  48 tggtgtagcattgcatgccaaactatctgttaacaaaagattgtgggaagagaaagttgatgcctttaagaaatggggttggtctgatgaagat 141  Q
    ||||||||| ||||  |||||||||||||| || |||| |||||||||||||||||| |||||||||||||| ||||||||||||| |||||||    
T  14475827 tggtgtagcgttgctagccaaactatctgtaaagaaaacattgtgggaagagaaagtcgatgcctttaagaagtggggttggtctgctgaagat 14475734  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 14502680 - 14502754
Alignment:
Q  146 tgataaagttaatttagtgatgggcttttgggtctatcagttgggttgggatgctatggccattgccaaaacacc 220  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  14502680 tgataaaattaatttagtgatgagcttttgggtcaatcagttgggttgggatgctaaggacattgccaaaacacc 14502754  T

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Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 14481044 - 14480915
Alignment:
Q  19 ttggggtttaatcctgcaacaacaaattctggtgtagcattgcatgccaaactatctgttaacaaaagattgtgggaagagaaagttgatgcctttaaga 118  Q
    ||||||||||||||| ||| |  ||  | ||||||||| ||||  ||||||  ||| || | |||||  |||||| ||||||||||||||||||||||||    
T  14481044 ttggggtttaatccttcaaaagtaacctttggtgtagccttgcgagccaaaacatccgtaagcaaaactttgtggaaagagaaagttgatgcctttaaga 14480945  T
Q  119 aatggggttggtctgatgaagatattatga 148  Q
    | ||||||||||||||||||||||||||||    
T  14480944 agtggggttggtctgatgaagatattatga 14480915  T

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Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 14145422 - 14145494
Alignment:
Q  156 aatttagtgatgggcttttgggtctatcagttgggttgggatgctatggccattgccaaaacaccttatattt 228  Q
    ||||||||||||  |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||    
T  14145422 aatttagtgatgaacttttgggtcaatcagttgggatgggatgctatggccattgccaaaacaccttttattt 14145494  T

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Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 14161794 - 14161725
Alignment:
Q  146 tgataaagttaatttagtgatgggcttttgggtctatcagttgggttgggatgctatggccattgccaaa 215  Q
    ||||||| |||||||| |||||  |||||||||| |||||||||||||||||||||||||||||||||||    
T  14161794 tgataaaattaatttactgatgaacttttgggtcaatcagttgggttgggatgctatggccattgccaaa 14161725  T

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Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 14850275 - 14850220
Alignment:
Q  91 tgggaagagaaagttgatgcctttaagaaatggggttggtctgatgaagatattat 146  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14850275 tgggatgagaaagttgatgcctttaagaaatggggttggtctgatgaagatgttat 14850220  T

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Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 15008215 - 15008270
Alignment:
Q  91 tgggaagagaaagttgatgcctttaagaaatggggttggtctgatgaagatattat 146  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15008215 tgggatgagaaagttgatgcctttaagaaatggggttggtctgatgaagatgttat 15008270  T

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Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 14567765 - 14567813
Alignment:
Q  91 tgggaagagaaagttgatgcctttaagaaatggggttggtctgatgaag 139  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14567765 tgggatgagaaagttgatgcctttaagaaatggggttggtctgatgaag 14567813  T

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Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 14552726 - 14552781
Alignment:
Q  91 tgggaagagaaagttgatgcctttaagaaatggggttggtctgatgaagatattat 146  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  14552726 tgggatgagaaagttgatgtctttaagaaatggggttggtctgatgaagatgttat 14552781  T

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Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 14495092 - 14495145
Alignment:
Q  88 ttgtgggaagagaaagttgatgcctttaagaaatggggttggtctgatgaagat 141  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| |||||||||    
T  14495092 ttgtggaaagagaaagttgatgccttgaagaaatggggttggtcggatgaagat 14495145  T

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Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 14502579 - 14502632
Alignment:
Q  88 ttgtgggaagagaaagttgatgcctttaagaaatggggttggtctgatgaagat 141  Q
    |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||    
T  14502579 ttgtggaaagagaaagttgatgcctttaagaagtggggttggtcggatgaagat 14502632  T

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Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 14145237 - 14145364
Alignment:
Q  14 aggacttggggtttaatcctgcaacaacaaattctggtgtagcattgcatgccaaactatctgttaacaaaagattgtgggaagagaaagttgatgcctt 113  Q
    |||| ||||||||||||||| ||| ||||| || ||||| |||||||   ||||||  || |||  ||||||   | ||| ||||||||||||||||| |    
T  14145237 aggatttggggtttaatccttcaaaaacaacttttggtgcagcattgatagccaaaacatttgtacacaaaaccctatggaaagagaaagttgatgccct 14145336  T
Q  114 taagaaatggggttggtctgatgaagat 141  Q
     |||||||||||||||||||| ||||||    
T  14145337 aaagaaatggggttggtctgaagaagat 14145364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 14485754 - 14485813
Alignment:
Q  161 agtgatgggcttttgggtctatcagttgggttgggatgctatggccattgccaaaacacc 220  Q
    |||||||  |||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  14485754 agtgatgaacttttgggtcaatcagttaggttgggatgctttggccattgccaaaacacc 14485813  T

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Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 14534374 - 14534429
Alignment:
Q  91 tgggaagagaaagttgatgcctttaagaaatggggttggtctgatgaagatattat 146  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  14534374 tgggatgagaaagttgatgtcttgaagaaatggggttggtctgatgaagatgttat 14534429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 15024152 - 15024205
Alignment:
Q  91 tgggaagagaaagttgatgcctttaagaaatggggttggtctgatgaagatatt 144  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||||| |||||    
T  15024152 tgggatgagaaagttgacacctttaagaaatggggttggtctgatgaaaatatt 15024205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 14520530 - 14520578
Alignment:
Q  91 tgggaagagaaagttgatgcctttaagaaatggggttggtctgatgaag 139  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  14520530 tgggatgagaaagttgatgtctttaagaaatggggctggtctgatgaag 14520578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 15003812 - 15003764
Alignment:
Q  98 agaaagttgatgcctttaagaaatggggttggtctgatgaagatattat 146  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  15003812 agaaagttgacgtctttaagaaatggggttggtctgatgaagatgttat 15003764  T

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Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 15013629 - 15013677
Alignment:
Q  98 agaaagttgatgcctttaagaaatggggttggtctgatgaagatattat 146  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  15013629 agaaagttgacgtctttaagaaatggggttggtctgatgaagatgttat 15013677  T

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Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 15020124 - 15020172
Alignment:
Q  98 agaaagttgatgcctttaagaaatggggttggtctgatgaagatattat 146  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  15020124 agaaagttgacgtctttaagaaatggggttggtctgatgaagatgttat 15020172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 31969549 - 31969597
Alignment:
Q  98 agaaagttgatgcctttaagaaatggggttggtctgatgaagatattat 146  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  31969549 agaaagttgacgtctttaagaaatggggttggtctgatgaagatgttat 31969597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 14525288 - 14525343
Alignment:
Q  91 tgggaagagaaagttgatgcctttaagaaatggggttggtctgatgaagatattat 146  Q
    ||||| |||||||||||||  |||||||||||||||||| ||||||||||| ||||    
T  14525288 tgggatgagaaagttgatgtttttaagaaatggggttggactgatgaagatgttat 14525343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 14529149 - 14529204
Alignment:
Q  91 tgggaagagaaagttgatgcctttaagaaatggggttggtctgatgaagatattat 146  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||| | ||||||    
T  14529149 tgggatgagaaaattgatacctttaagaaatggggttggtctgatgaggctattat 14529204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 14543375 - 14543430
Alignment:
Q  91 tgggaagagaaagttgatgcctttaagaaatggggttggtctgatgaagatattat 146  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||| | ||||||    
T  14543375 tgggatgagaaaattgatacctttaagaaatggggttggtctgatgaggctattat 14543430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 14161888 - 14161839
Alignment:
Q  95 aagagaaagttgatgcctttaagaaatggggttggtctgatgaagatatt 144  Q
    |||||||||| ||  |||||||||||||||| ||||||||||||||||||    
T  14161888 aagagaaagtcgacacctttaagaaatggggctggtctgatgaagatatt 14161839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 14475686 - 14475633
Alignment:
Q  146 tgataaagttaatttagtgatgggcttttgggtctatcagttgggttgggatgc 199  Q
    ||||||| ||||| ||||||||  |||||||||| |||||||||||||||||||    
T  14475686 tgataaaattaatctagtgatgaacttttgggtcaatcagttgggttgggatgc 14475633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 14485650 - 14485691
Alignment:
Q  100 aaagttgatgcctttaagaaatggggttggtctgatgaagat 141  Q
    |||||||||| ||||||||||||||| |||||||||||||||    
T  14485650 aaagttgatgtctttaagaaatggggatggtctgatgaagat 14485691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 14168680 - 14168641
Alignment:
Q  99 gaaagttgatgcctttaagaaatggggttggtctgatgaa 138  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  14168680 gaaagttgttgtctttaagaaatggggttggtctgatgaa 14168641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 14512706 - 14512747
Alignment:
Q  98 agaaagttgatgcctttaagaaatggggttggtctgatgaag 139  Q
    |||||||||||| |||||||||| |||||||||||| |||||    
T  14512706 agaaagttgatgtctttaagaaacggggttggtctggtgaag 14512747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 14158419 - 14158383
Alignment:
Q  105 tgatgcctttaagaaatggggttggtctgatgaagat 141  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  14158419 tgatgcctttaggaaatagggttggtctgatgaagat 14158383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 24741545 - 24741591
Alignment:
Q  95 aagagaaagttgatgcctttaagaaatggggttggtctgatgaagat 141  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  24741545 aagagacagttgatgcctttaagaaatggggttggtttgatgaagat 24741591  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 9809445 - 9809474
Alignment:
Q  186 ttgggttgggatgctatggccattgccaaa 215  Q
    ||||||||||||||||||||||||||||||    
T  9809445 ttgggttgggatgctatggccattgccaaa 9809474  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 49553799 - 49553827
Alignment:
Q  112 tttaagaaatggggttggtctgatgaaga 140  Q
    |||||||||||||||||||||||||||||    
T  49553799 tttaagaaatggggttggtctgatgaaga 49553827  T

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