View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_high_9 (Length: 547)
Name: NF1297_high_9
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 30 - 435
Target Start/End: Complemental strand, 26276959 - 26276567
Alignment:
| Q |
30 |
gctcaaactcttgatccatatatcttcagctacaaatgcttcactatcattgttacgatgccatgaccaatttgcatgtgtttcgttcactattctcaac |
129 |
Q |
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| T |
26276959 |
gctcaaactcttgatccatatatcttcagctacaaatgcttcactatcattgttacgatgccatgaccaatttgcatgtgtttcgttcactattctcaac |
26276860 |
T |
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| Q |
130 |
cttccatgaccaaagcttgcctctctatacaatgagagtggacttggaggcttcttaaacctatacaatccaacaattaacatggacatgtgcataaata |
229 |
Q |
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| T |
26276859 |
cttccatgaccaaagcttgcctctctatacaatgagagtggacttggaggcttcttaaacctatacaatccaacaattaacatggacatgtgcataaata |
26276760 |
T |
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| Q |
230 |
taaatatacaaatataagnnnnnnnnnnnnnnnnnnnntatttgtaggttaacaatattagcttagatagtaaaataaacttcatcaataaggtttgtca |
329 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26276759 |
taaatatacaaatataag--aagaaaaaaaattaaaaatatatgtaggttaacaatattagcttagatagtaaaataaactt-----------tttgtca |
26276673 |
T |
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| Q |
330 |
ctcactttaatgcaagtccttcacggtttcctccatcaccaattgtcacgtacaacggaccacatggatcagccttattgtcatagattctagtctgcaa |
429 |
Q |
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| T |
26276672 |
ctcactttaatgcaagtccttcacggtttcctccatcaccaattgtcacgtacaacggaccacatggatcagccttattgtcatagattctagtctgcaa |
26276573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 547
Target Start/End: Complemental strand, 26276497 - 26276455
Alignment:
| Q |
505 |
tagagacaaacaccgaaacacgtatctataaatttagcacctc |
547 |
Q |
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| T |
26276497 |
tagagacaaacaccgaaacatgtatctataaatttagcgcctc |
26276455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 42273490 - 42273604
Alignment:
| Q |
79 |
ttgttacgatgccatgaccaatttgcatgtgtttcgttcactattctcaaccttccatgaccaaagcttgcctctctatacaatgagagtggacttggag |
178 |
Q |
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||||| |||||||||||||||| |||||| ||||| |||| ||||| |||||||||||||| ||||||| ||||| | ||||||||||||||||||||| |
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| T |
42273490 |
ttgttgcgatgccatgaccaatgtgcatgagtttcattcagtattcgtaaccttccatgaccgaagcttggctctcgaaacaatgagagtggacttggag |
42273589 |
T |
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| Q |
179 |
gcttcttaaacctat |
193 |
Q |
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| T |
42273590 |
gattcttaaacctat |
42273604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 405
Target Start/End: Original strand, 42273724 - 42273798
Alignment:
| Q |
331 |
tcactttaatgcaagtccttcacggtttcctccatcaccaattgtcacgtacaacggaccacatggatcagcctt |
405 |
Q |
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|||| ||| ||||||||| || |||||||||||||| ||||||||||| |||| ||||| |||| ||||||||| |
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| T |
42273724 |
tcaccttagtgcaagtccctcgcggtttcctccatccccaattgtcacatacattggaccgcatgaatcagcctt |
42273798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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