View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_low_106 (Length: 260)

Name: NF1297_low_106
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_low_106
NF1297_low_106
[»] chr2 (3 HSPs)
chr2 (13-222)||(40076599-40076821)
chr2 (128-222)||(40058713-40058807)
chr2 (135-229)||(40084664-40084751)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 40076599 - 40076821
Alignment:
Q  13 agtagcataggaagacaacaatgtcaccaccgacaacctttttgtttgtcaacaaacagcttacacctggcatttccttc------------gcacatta 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||    
T  40076599 agtagcctaggaagacaacaatgtcaccaccgacaacctttttgtttgtcaacaaacagcttacacctggcatttccttctcctcatagaatgcacatta 40076698  T
Q  101 cacatgttatacagtacttgtagcaccttacccttgttcttcttacaa-ccatcatcacttacatttcacacccacgtgaccaaaaaacacaaacacatg 199  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40076699 cacatgttatacagtacttgtagcaccttactcttgttcttcttacaaaccatcatcacttacatttcacacccacgtgaccaaaaaacacaaacacatg 40076798  T
Q  200 tgtaacatataatccaaaccaaa 222  Q
    |||||||||||||||||||||||    
T  40076799 tgtaacatataatccaaaccaaa 40076821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 40058713 - 40058807
Alignment:
Q  128 ttacccttgttcttcttacaaccatcatcacttacatttcacacccacgtgaccaaaaaacacaaacacatgtgtaacatataatccaaaccaaa 222  Q
    |||| ||||||||||||  || |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||    
T  40058713 ttactcttgttcttcttcaaagcatcatcacttacatttcacacccacgtgaccaaaaaatacaaacacatgcgtaacaaataaaccaaaccaaa 40058807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 40084664 - 40084751
Alignment:
Q  135 tgttcttcttacaaccatcatcacttacatttcacacccacgtgaccaaaaaacacaaacacatgtgtaacatataatccaaaccaaaccaaagt 229  Q
    ||||||||||  || ||||||||||||||||||||| ||||||||||||||     |||||||  ||||||| |||| |||||||||||||||||    
T  40084664 tgttcttcttctaagcatcatcacttacatttcacatccacgtgaccaaaa-----aaacaca--tgtaacaaataaaccaaaccaaaccaaagt 40084751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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