View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_low_107 (Length: 257)

Name: NF1297_low_107
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_low_107
NF1297_low_107
[»] chr5 (26 HSPs)
chr5 (1-228)||(5140499-5140728)
chr5 (1-62)||(40756539-40756600)
chr5 (1-62)||(5204615-5204676)
chr5 (1-61)||(39939032-39939092)
chr5 (14-63)||(19239154-19239203)
chr5 (1-62)||(23690499-23690560)
chr5 (1-61)||(4429767-4429827)
chr5 (8-60)||(33678513-33678564)
chr5 (13-60)||(5512682-5512729)
chr5 (13-60)||(34901657-34901704)
chr5 (7-62)||(35162664-35162719)
chr5 (5-62)||(4367139-4367197)
chr5 (15-61)||(32455656-32455701)
chr5 (7-61)||(39979697-39979751)
chr5 (13-61)||(7080470-7080518)
chr5 (9-61)||(16432657-16432709)
chr5 (16-60)||(31588597-31588641)
chr5 (24-63)||(10118240-10118279)
chr5 (8-59)||(28318348-28318398)
chr5 (9-60)||(40109891-40109942)
chr5 (15-61)||(9499763-9499809)
chr5 (8-61)||(2852053-2852105)
chr5 (15-60)||(4039469-4039514)
chr5 (7-60)||(17069339-17069391)
chr5 (5-65)||(13091265-13091324)
chr5 (25-61)||(19189479-19189515)
[»] chr7 (21 HSPs)
chr7 (1-61)||(29688923-29688983)
chr7 (1-62)||(21919686-21919747)
chr7 (1-60)||(48460251-48460310)
chr7 (5-62)||(31743653-31743710)
chr7 (1-60)||(5215372-5215431)
chr7 (1-60)||(23182390-23182449)
chr7 (5-57)||(41769289-41769341)
chr7 (7-61)||(42584115-42584169)
chr7 (24-57)||(8577927-8577960)
chr7 (15-55)||(27800033-27800073)
chr7 (5-56)||(38859586-38859637)
chr7 (7-62)||(43631053-43631107)
chr7 (15-61)||(19345973-19346019)
chr7 (5-59)||(32823458-32823512)
chr7 (15-57)||(43542141-43542183)
chr7 (5-54)||(13806712-13806761)
chr7 (7-64)||(26605052-26605108)
chr7 (15-60)||(45701031-45701076)
chr7 (13-61)||(1343380-1343428)
chr7 (9-61)||(38882817-38882869)
chr7 (8-64)||(46575097-46575152)
[»] chr6 (24 HSPs)
chr6 (1-65)||(21294137-21294201)
chr6 (1-60)||(1705953-1706012)
chr6 (1-60)||(14507968-14508027)
chr6 (1-61)||(24249153-24249213)
chr6 (1-60)||(2994322-2994381)
chr6 (5-61)||(10965975-10966031)
chr6 (5-60)||(10887809-10887864)
chr6 (1-60)||(19474019-19474078)
chr6 (1-57)||(1371743-1371799)
chr6 (1-57)||(1379491-1379547)
chr6 (15-58)||(16893259-16893302)
chr6 (5-63)||(1339724-1339782)
chr6 (15-61)||(6295739-6295785)
chr6 (15-61)||(6302549-6302595)
chr6 (7-60)||(31644410-31644462)
chr6 (13-61)||(7344320-7344368)
chr6 (15-62)||(24151122-24151169)
chr6 (7-61)||(4509783-4509836)
chr6 (8-62)||(23416852-23416905)
chr6 (17-67)||(26810770-26810820)
chr6 (7-61)||(29023618-29023671)
chr6 (15-64)||(9662120-9662168)
chr6 (15-60)||(14002398-14002443)
chr6 (8-60)||(3141040-3141091)
[»] chr1 (34 HSPs)
chr1 (1-61)||(38207528-38207588)
chr1 (1-62)||(40054935-40054996)
chr1 (1-60)||(43916346-43916405)
chr1 (6-61)||(7435866-7435921)
chr1 (3-60)||(1845073-1845130)
chr1 (1-60)||(44808752-44808811)
chr1 (10-61)||(49982455-49982506)
chr1 (5-62)||(51004788-51004845)
chr1 (8-64)||(8396704-8396759)
chr1 (8-60)||(32144669-32144720)
chr1 (10-61)||(23539941-23539992)
chr1 (5-56)||(26423845-26423896)
chr1 (1-60)||(45650355-45650414)
chr1 (24-62)||(26311380-26311418)
chr1 (7-61)||(38261157-38261210)
chr1 (8-57)||(17525792-17525840)
chr1 (7-60)||(25702435-25702487)
chr1 (15-60)||(32912211-32912256)
chr1 (19-67)||(10574700-10574748)
chr1 (15-66)||(12838131-12838182)
chr1 (13-60)||(29877702-29877749)
chr1 (13-60)||(36735512-36735559)
chr1 (8-59)||(47544652-47544702)
chr1 (15-66)||(50533898-50533949)
chr1 (7-61)||(9587998-9588051)
chr1 (7-61)||(48976874-48976927)
chr1 (24-61)||(17203117-17203154)
chr1 (15-60)||(34410950-34410995)
chr1 (15-60)||(39084710-39084755)
chr1 (15-60)||(40868134-40868179)
chr1 (7-60)||(51610536-51610588)
chr1 (7-63)||(12105157-12105212)
chr1 (7-63)||(24230566-24230621)
chr1 (8-60)||(31821571-31821622)
[»] chr8 (31 HSPs)
chr8 (1-61)||(38764737-38764797)
chr8 (8-61)||(17792559-17792611)
chr8 (5-59)||(6804009-6804063)
chr8 (15-65)||(34057824-34057874)
chr8 (9-58)||(30777274-30777323)
chr8 (13-62)||(32887664-32887713)
chr8 (1-36)||(7886224-7886259)
chr8 (7-58)||(34520924-34520975)
chr8 (5-63)||(12107481-12107539)
chr8 (8-58)||(27172269-27172318)
chr8 (7-60)||(2261368-2261420)
chr8 (12-61)||(12632903-12632952)
chr8 (5-54)||(35754465-35754514)
chr8 (7-60)||(36672010-36672062)
chr8 (15-55)||(12801467-12801507)
chr8 (13-61)||(23870267-23870315)
chr8 (15-58)||(2666866-2666909)
chr8 (16-59)||(6982786-6982828)
chr8 (5-60)||(31893333-31893388)
chr8 (8-58)||(118165-118214)
chr8 (15-57)||(463838-463880)
chr8 (13-63)||(9508854-9508904)
chr8 (24-62)||(39722325-39722363)
chr8 (24-72)||(5273420-5273471)
chr8 (8-61)||(7128089-7128141)
chr8 (5-62)||(9712453-9712510)
chr8 (15-60)||(40547690-40547735)
chr8 (15-55)||(2879936-2879976)
chr8 (24-64)||(5215318-5215358)
chr8 (13-65)||(26439504-26439555)
chr8 (15-59)||(28886043-28886087)
[»] chr2 (22 HSPs)
chr2 (1-61)||(41555430-41555490)
chr2 (1-60)||(15362469-15362528)
chr2 (1-60)||(34188882-34188941)
chr2 (10-62)||(40287704-40287756)
chr2 (13-67)||(8362394-8362448)
chr2 (15-60)||(5615745-5615790)
chr2 (13-61)||(8333890-8333938)
chr2 (1-61)||(40810766-40810826)
chr2 (16-59)||(12002707-12002750)
chr2 (5-56)||(12071505-12071556)
chr2 (15-61)||(2859358-2859404)
chr2 (15-60)||(38073106-38073151)
chr2 (15-60)||(45690499-45690544)
chr2 (1-60)||(34852355-34852414)
chr2 (15-61)||(11088587-11088633)
chr2 (7-61)||(35895310-35895363)
chr2 (8-61)||(7673294-7673346)
chr2 (8-61)||(25331454-25331506)
chr2 (15-60)||(25740348-25740393)
chr2 (8-61)||(32602302-32602354)
chr2 (29-65)||(5819690-5819726)
chr2 (24-60)||(37781866-37781902)
[»] chr4 (37 HSPs)
chr4 (3-62)||(4491205-4491264)
chr4 (1-60)||(19527071-19527130)
chr4 (1-58)||(39103539-39103596)
chr4 (5-60)||(15060906-15060961)
chr4 (1-59)||(12756350-12756408)
chr4 (1-63)||(49286685-49286747)
chr4 (1-61)||(34927101-34927161)
chr4 (5-60)||(4695659-4695714)
chr4 (1-60)||(31975897-31975956)
chr4 (1-48)||(53973468-53973515)
chr4 (1-63)||(19595279-19595341)
chr4 (8-60)||(126933-126984)
chr4 (5-61)||(34584181-34584237)
chr4 (5-60)||(595296-595351)
chr4 (15-61)||(27950257-27950303)
chr4 (7-60)||(3690866-3690919)
chr4 (15-60)||(32570729-32570774)
chr4 (15-56)||(38960969-38961010)
chr4 (9-58)||(56303194-56303242)
chr4 (8-60)||(4720826-4720877)
chr4 (5-61)||(22077717-22077773)
chr4 (13-61)||(22789581-22789629)
chr4 (5-56)||(9579668-9579719)
chr4 (5-56)||(9585363-9585414)
chr4 (1-60)||(31296530-31296589)
chr4 (1-36)||(43349090-43349125)
chr4 (8-58)||(1433809-1433858)
chr4 (7-57)||(31999079-31999128)
chr4 (10-60)||(52323966-52324016)
chr4 (15-56)||(25607694-25607735)
chr4 (7-60)||(46663680-46663732)
chr4 (8-60)||(1857159-1857210)
chr4 (24-56)||(18051778-18051810)
chr4 (13-61)||(21722552-21722600)
chr4 (15-55)||(25684098-25684138)
chr4 (7-63)||(30060527-30060582)
chr4 (1-57)||(30168101-30168157)
[»] chr3 (32 HSPs)
chr3 (1-60)||(43903420-43903479)
chr3 (1-60)||(29698322-29698381)
chr3 (1-60)||(32121899-32121958)
chr3 (15-60)||(35375511-35375556)
chr3 (7-64)||(40474189-40474245)
chr3 (1-55)||(8353067-8353121)
chr3 (15-61)||(48795438-48795484)
chr3 (8-61)||(8966286-8966338)
chr3 (15-60)||(14998147-14998192)
chr3 (7-60)||(29815482-29815535)
chr3 (8-57)||(50029754-50029802)
chr3 (15-56)||(52776453-52776494)
chr3 (5-61)||(11510716-11510772)
chr3 (10-58)||(15804619-15804667)
chr3 (8-60)||(26850281-26850332)
chr3 (8-60)||(35501145-35501196)
chr3 (7-62)||(1129127-1129181)
chr3 (2-61)||(9252202-9252260)
chr3 (18-61)||(35844826-35844869)
chr3 (13-60)||(52058514-52058561)
chr3 (15-61)||(24397745-24397791)
chr3 (7-61)||(25834584-25834637)
chr3 (13-67)||(29385042-29385096)
chr3 (7-61)||(40478112-40478165)
chr3 (13-59)||(41982391-41982437)
chr3 (15-57)||(47175830-47175872)
chr3 (8-61)||(1021329-1021381)
chr3 (7-60)||(44379414-44379466)
chr3 (24-56)||(4393517-4393549)
chr3 (5-61)||(15298211-15298267)
chr3 (7-67)||(35748915-35748974)
chr3 (8-60)||(53289230-53289281)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-60)||(214487-214546)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-67)||(11000-11066)
[»] scaffold0721 (1 HSPs)
scaffold0721 (5-60)||(6585-6641)
[»] scaffold0271 (1 HSPs)
scaffold0271 (7-60)||(17014-17067)
[»] scaffold0067 (1 HSPs)
scaffold0067 (14-54)||(41750-41790)
[»] scaffold0923 (1 HSPs)
scaffold0923 (7-60)||(39-91)
[»] scaffold1319 (1 HSPs)
scaffold1319 (8-60)||(43-94)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5140728 - 5140499
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaattttgttt--ttcctatgatttttgctaacattaatt 98  Q
    ||||||| || ||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||  |||  |||||||| ||||||||||||||||||    
T  5140728 aatatttaaaacaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagtttcctaatttcttttgtttcctatgttttttgctaacattaatt 5140629  T
Q  99 gaggggttggcattttctttttgttgctaaaaacccaaaattctaatagggaatcttcttcacgatctactcatcatttcaacacttacattattatccc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5140628 gaggggttggcattttctttttgttgctaaaaacccaaaattctaatagggaatcttcttcacgatctactcatcatttcaacacttccattattatccc 5140529  T
Q  199 caataactttatagacacaaatgttaaata 228  Q
    ||||||||||||||||||||||||||||||    
T  5140528 caataactttatagacacaaatgttaaata 5140499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40756600 - 40756539
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  40756600 aatatttgaagcaggagtaccgatacacctcaatttgtgaggtgtaccgtagaagttcccta 40756539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5204676 - 5204615
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  5204676 aatatttaaagcaggagtaccgatacacctcaatttgtgaggtgtaccgtagaagttcccta 5204615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 39939092 - 39939032
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  39939092 aatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccct 39939032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 19239154 - 19239203
Alignment:
Q  14 ggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaa 63  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  19239154 ggagtatcgatacacctcaatttatgaggtgtaccatagaagctccctaa 19239203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23690560 - 23690499
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    |||||||||||||| | ||||| ||||||||||||| ||||||||||| |||||||||||||    
T  23690560 aatatttgaagcagaaataccggtacacctcaatttttgaggtgtaccgtagaagttcccta 23690499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4429767 - 4429827
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||| |||| || ||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  4429767 aatatatgaaacatgagtaccaatacacctcaatttgtgaggtgtaccgtagaagttccct 4429827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 33678513 - 33678564
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||||||||||||    
T  33678513 gaagcaggagtaccgatacacctcattttgtga-gtgtaccatagaagttccc 33678564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 5512729 - 5512682
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  5512729 aggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 5512682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 34901704 - 34901657
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||| |||||| |||||||||||||||||| |||||||||||    
T  34901704 aggagtaccggtacaccccaatttatgaggtgtaccgtagaagttccc 34901657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 35162664 - 35162719
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    ||||||| ||||||| |||||||| ||||||||||||||| | |||||||||||||    
T  35162664 tgaagcaagagtaccaatacaccttaatttatgaggtgtaacgtagaagttcccta 35162719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 4367139 - 4367197
Alignment:
Q  5 tttgaagcaggagtaccgatacacctca-atttatgaggtgtaccatagaagttcccta 62  Q
    |||||| |||||||||||||||||||||  ||| ||||||||||| |||||||||||||    
T  4367139 tttgaaccaggagtaccgatacacctcacttttgtgaggtgtaccgtagaagttcccta 4367197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 32455656 - 32455701
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  32455656 gagtaccgatacaccttaatttatga-gtgtaccatagaagttccct 32455701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 39979697 - 39979751
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||| |||| || ||||||||||||| ||||||||||| ||||||||||||    
T  39979697 tgaagcagaagtatcggtacacctcaatttgtgaggtgtaccgtagaagttccct 39979751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 7080470 - 7080518
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||| |||||| |||||| ||||||||||| ||||||||||||    
T  7080470 aggagtaccggtacaccccaatttgtgaggtgtaccgtagaagttccct 7080518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 16432709 - 16432657
Alignment:
Q  9 aagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||| ||| ||||||||||||||||| ||||||| || |||||||||    
T  16432709 aagcaggagttccggtacacctcaatttatgaagtgtaccgtaaaagttccct 16432657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 31588597 - 31588641
Alignment:
Q  16 agtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||||    
T  31588597 agtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 31588641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 10118279 - 10118240
Alignment:
Q  24 tacacctcaatttatgaggtgtaccatagaagttccctaa 63  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  10118279 tacacctcaatttatgaggtgtaccatagaaactccctaa 10118240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 28318398 - 28318348
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcc 59  Q
    ||||||||||||||||||||||||| ||||| | ||||||| ||||||||||    
T  28318398 gaagcaggagtaccgatacacctcattttat-aagtgtaccgtagaagttcc 28318348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 40109942 - 40109891
Alignment:
Q  9 aagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||| ||||||||||||||| |||||||| ||||||||| ||||| |||||    
T  40109942 aagcaagagtaccgatacaccccaatttataaggtgtaccgtagaaattccc 40109891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 9499763 - 9499809
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||| || ||||||||||||||||||||||||| |||||| |||||    
T  9499763 gagtatcggtacacctcaatttatgaggtgtaccgtagaagctccct 9499809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 2852053 - 2852105
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||| |||||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  2852053 gaagcatgagtaccgatacacctcattttgtga-gtgtaccgtagaagttccct 2852105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 4039514 - 4039469
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||| ||||||| ||||| ||||||||||| |||||||||||    
T  4039514 gagtaccggtacaccttaatttgtgaggtgtaccgtagaagttccc 4039469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 17069339 - 17069391
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||| |||||||||||||| || ||| ||| |||||||||||    
T  17069339 tgaagcaggagtaccggtacacctcaatttacga-gtgcaccgtagaagttccc 17069391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 13091265 - 13091324
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaatt 65  Q
    ||||||| | |||||||| ||||||| |||||| | |||||||| ||||||||||||||||    
T  13091265 tttgaagtaagagtaccggtacaccttaatttacg-ggtgtaccgtagaagttccctaatt 13091324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 19189479 - 19189515
Alignment:
Q  25 acacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  19189479 acacctcaatttatgaggtgtaccgtagaagtcccct 19189515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29688983 - 29688923
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  29688983 aatatttgaagcaggagtaccggtacacctcaatttatgaggtgtaccgtagaagttccct 29688923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 21919747 - 21919686
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||    
T  21919747 aatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcccta 21919686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 48460310 - 48460251
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||    
T  48460310 aatatttgaagcaggagtaccggtatacctcaatttgtgaggtgtaccatagaagttccc 48460251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 31743653 - 31743710
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    |||||||||||||||||| |||||| |||||| ||||||||||| |||||||||||||    
T  31743653 tttgaagcaggagtaccggtacaccacaatttgtgaggtgtaccgtagaagttcccta 31743710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5215372 - 5215431
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||| |||||||||||||| ||||||||||||| ||| ||||||| |||||||||||    
T  5215372 aatatttaaagcaggagtaccggtacacctcaatttgtgatgtgtaccgtagaagttccc 5215431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23182449 - 23182390
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||  ||||||| ||||| ||||||||||| |||||||||||    
T  23182449 aatatttgaagcaggagtaccagtacaccttaatttgtgaggtgtaccgtagaagttccc 23182390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 41769341 - 41769289
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagtt 57  Q
    |||||||||||||||||  ||||||||||||||||||||||| | ||||||||    
T  41769341 tttgaagcaggagtaccagtacacctcaatttatgaggtgtatcgtagaagtt 41769289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 42584115 - 42584169
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||||||||||| || ||||| ||||||| ||||||||||| ||||||||||||    
T  42584115 tgaagcaggagtatcggtacacatcaatttgtgaggtgtaccgtagaagttccct 42584169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 8577960 - 8577927
Alignment:
Q  24 tacacctcaatttatgaggtgtaccatagaagtt 57  Q
    ||||||||||||||||||||||||||||||||||    
T  8577960 tacacctcaatttatgaggtgtaccatagaagtt 8577927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 27800073 - 27800033
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaag 55  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  27800073 gagtaccggtacacctcaatttatgaggtgtaccgtagaag 27800033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 38859586 - 38859637
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagt 56  Q
    ||||||| |||||||||  ||||||||||||||| ||||||||| |||||||    
T  38859586 tttgaagtaggagtaccagtacacctcaatttataaggtgtaccgtagaagt 38859637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 43631107 - 43631053
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    ||||||| |||||||| ||||||||||| || ||| ||||||||||||||||||||    
T  43631107 tgaagcaagagtaccggtacacctcaatctacgag-tgtaccatagaagttcccta 43631053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 19345973 - 19346019
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||| || ||||||||||||||||||||||||| |||||| |||||    
T  19345973 gagtatcggtacacctcaatttatgaggtgtaccgtagaagctccct 19346019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 32823458 - 32823512
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcc 59  Q
    ||||||||||||||| || ||||||||||||| |  |||||||| ||||||||||    
T  32823458 tttgaagcaggagtatcggtacacctcaatttgtttggtgtaccgtagaagttcc 32823512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 43542141 - 43542183
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagtt 57  Q
    ||||| |||| ||||||||||||||||||||||| ||||||||    
T  43542141 gagtatcgatgcacctcaatttatgaggtgtaccgtagaagtt 43542183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 13806712 - 13806761
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaa 54  Q
    ||||||| |||||||| | ||||||||||||||||| ||||||| |||||    
T  13806712 tttgaagtaggagtactggtacacctcaatttatgaagtgtaccgtagaa 13806761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 26605108 - 26605052
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaat 64  Q
    ||||||| |||||||| ||||||||| ||| |||| |||||| |||||||||||||||    
T  26605108 tgaagcaagagtaccggtacacctcattttgtgag-tgtaccgtagaagttccctaat 26605052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 45701076 - 45701031
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||| || ||||||||||||||||||||||||| |||||| ||||    
T  45701076 gagtatcggtacacctcaatttatgaggtgtaccgtagaagctccc 45701031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 1343380 - 1343428
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||| |||| ||||||||||| |||||||| ||||||| ||||    
T  1343380 aggagtaccggtacatctcaatttatgtggtgtaccgtagaagtcccct 1343428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 38882869 - 38882817
Alignment:
Q  9 aagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||| |||||||| ||||||||| ||| | ||||||||| ||||||||||||    
T  38882869 aagcaagagtaccggtacacctcattttgttaggtgtaccgtagaagttccct 38882817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 46575152 - 46575097
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaat 64  Q
    ||||||||||||||| ||||||||| ||| |||  |||||| |||||||||||||||    
T  46575152 gaagcaggagtaccggtacacctcattttgtga-atgtaccgtagaagttccctaat 46575097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21294137 - 21294201
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaatt 65  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  21294137 aatatttgaagcaggagtaccggtacacctcaatttatgaggtgtaccgtaggagttccctaatt 21294201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1705953 - 1706012
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  1705953 aatatttgaagcaggagtaccggtacacctcaatttatgaggtgtaccgtagaagttccc 1706012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 14507968 - 14508027
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  14507968 aatatttgaagcaggagtaccggtacacctcaatttatgaggtgtaccgtagaagttccc 14508027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24249153 - 24249213
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  24249153 aatatttgaagcaggagtaccgatacacctcaatttgtaaggtgtaccgtagaagttccct 24249213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2994381 - 2994322
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||    
T  2994381 aatatttgaagcaggagtaccggtacacctcaatttatgaggtgtactgtagaagttccc 2994322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 10965975 - 10966031
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  10965975 tttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccct 10966031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 10887864 - 10887809
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||    
T  10887864 tttgaagtaggagtaccggtacacctcaatttatgaggtgtaccgtagaagttccc 10887809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19474019 - 19474078
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||||||    
T  19474019 aatatttgaagcaagagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 19474078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1371743 - 1371799
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagtt 57  Q
    ||||||||||| |||||||||||||||||||||||| |||||| || | ||||||||    
T  1371743 aatatttgaaggaggagtaccgatacacctcaatttgtgaggtatatcgtagaagtt 1371799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1379491 - 1379547
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagtt 57  Q
    ||||||||||| |||||||||||||||||||||||| |||||| || | ||||||||    
T  1379491 aatatttgaaggaggagtaccgatacacctcaatttgtgaggtatatcgtagaagtt 1379547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 16893259 - 16893302
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttc 58  Q
    |||||||| ||||||||||||| |||||||||||||||||||||    
T  16893259 gagtaccggtacacctcaatttgtgaggtgtaccatagaagttc 16893302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 1339724 - 1339782
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaa 63  Q
    |||||||||| ||||| | ||||||||||||| ||| ||||||| ||||||||||||||    
T  1339724 tttgaagcagaagtactggtacacctcaatttgtgacgtgtaccgtagaagttccctaa 1339782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 6295739 - 6295785
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||||||||| ||||||||||| |||||| |||||    
T  6295739 gagtaccgatacacctcaatttgtgaggtgtaccgtagaagctccct 6295785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 6302549 - 6302595
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||||||||| ||||||||||| |||||| |||||    
T  6302549 gagtaccgatacacctcaatttgtgaggtgtaccgtagaagctccct 6302595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 31644462 - 31644410
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||| ||||||||||||||||||||||| || ||||||| |||||||||||    
T  31644462 tgaagcaagagtaccgatacacctcaatttacga-gtgtaccgtagaagttccc 31644410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 7344368 - 7344320
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||| |||||||||||||||| |||||||| ||||||| ||||    
T  7344368 aggagtaccggtacacctcaatttatgtggtgtaccgtagaagtcccct 7344320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 24151169 - 24151122
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    ||||| |||||||||||||||| ||||||||||| |||||| ||||||    
T  24151169 gagtatcgatacacctcaatttgtgaggtgtaccgtagaagctcccta 24151122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 4509783 - 4509836
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||| ||||||||| ||| ||| ||||||| ||||||||||||    
T  4509783 tgaagcaggagtaccggtacacctcactttgtga-gtgtaccgtagaagttccct 4509836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 23416852 - 23416905
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    ||||||||||||||| ||||||||| ||| ||| ||||||| |||||||||||||    
T  23416852 gaagcaggagtaccggtacacctcattttgtga-gtgtaccgtagaagttcccta 23416905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 26810820 - 26810770
Alignment:
Q  17 gtaccgatacacctcaatttatgaggtgtaccatagaagttccctaatttt 67  Q
    |||||||||||||| ||||||| ||||||||||||||| || ||| |||||    
T  26810820 gtaccgatacacctaaatttattaggtgtaccatagaatttaccttatttt 26810770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 29023671 - 29023618
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||||| |||||||| |||||||||||||| || ||||||| ||||||||||||    
T  29023671 tgaagcaagagtaccggtacacctcaatttacga-gtgtaccgtagaagttccct 29023618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 9662120 - 9662168
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaat 64  Q
    ||||||||||||||||||  |||||| ||||||| |||||||||||||||    
T  9662120 gagtaccgatacacctcatcttatga-gtgtaccgtagaagttccctaat 9662168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 14002443 - 14002398
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||| |||||||||||||||| ||||||||||| |||||| ||||    
T  14002443 gagtatcgatacacctcaatttctgaggtgtaccgtagaagctccc 14002398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 3141091 - 3141040
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||| | |||||||||| ||| |||| ||||||||||||||||||    
T  3141091 gaagcaggagtatcaatacacctcattttgtgag-tgtaccatagaagttccc 3141040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 38207588 - 38207528
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  38207588 aatatttgaagcagaagtaccgatacacctcaatttatgaggtgtaccgtagaagttccct 38207528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 40054935 - 40054996
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||    
T  40054935 aatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttcccta 40054996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 43916405 - 43916346
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  43916405 aatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 43916346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 7435866 - 7435921
Alignment:
Q  6 ttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  7435866 ttgaaggaggagtaccgatacacctcaatttgtgaggtgtaccgtagaagttccct 7435921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 1845130 - 1845073
Alignment:
Q  3 tatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||    
T  1845130 tatttgaagcaggagtaccggtacacctcaatttgtgaggtgcaccgtagaagttccc 1845073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 44808752 - 44808811
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||||||||||||| || ||||||||||||| |||| |||||| |||||||||||    
T  44808752 aatatttgaagcaggagtatcggtacacctcaatttgtgagatgtaccgtagaagttccc 44808811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 49982506 - 49982455
Alignment:
Q  10 agcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  49982506 agcaggagtatcggtacacctcaatttatgaggtgtaccgtagaagttccct 49982455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 51004845 - 51004788
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||| ||||| |||||||    
T  51004845 tttgaagtaggagtaccggtacacctcaatttgtgaggtgtaccgtagaaattcccta 51004788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 8396704 - 8396759
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaat 64  Q
    ||||||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||    
T  8396704 gaagcaggagtaccgatacacctcattttatga-gtgtaccgtagaaattccctaat 8396759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 32144720 - 32144669
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  32144720 gaagcaggaataccgatacaccttaatttatga-gtgtaccatagaagttccc 32144669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 23539992 - 23539941
Alignment:
Q  10 agcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||| |||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  23539992 agcaagagtaccggtacacctcaatttctgaggtgtaccgtagaagttccct 23539941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 26423896 - 26423845
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagt 56  Q
    ||||||| |||||||||| ||||||| ||||||||||||||||| |||||||    
T  26423896 tttgaagtaggagtaccggtacaccttaatttatgaggtgtaccgtagaagt 26423845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 45650355 - 45650414
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||| ||||||||| |||| |||||||| |||||| |||| |||||||||||    
T  45650355 aatatttgaagctggagtaccggtacatctcaatttgtgaggtataccgtagaagttccc 45650414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 26311418 - 26311380
Alignment:
Q  24 tacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  26311418 tacacctcaatttatgaggtgtaccatagaagtccccta 26311380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 38261157 - 38261210
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||| ||||||||| ||||||| ||||||| ||||||||||||    
T  38261157 tgaagcaggagtaccggtacacctcactttatga-gtgtaccgtagaagttccct 38261210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 17525792 - 17525840
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagtt 57  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||    
T  17525792 gaagcaggagtaccgatacaccttaatttatga-atgtaccatagaagtt 17525840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 25702487 - 25702435
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||    
T  25702487 tgaagcaagagtaccggtacacctcaatttatga-gtgtaccgtagaagttccc 25702435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 32912256 - 32912211
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||    
T  32912256 gagtaccgatacacctcaatttgtgaggtgtactgtagaagttccc 32912211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 10574700 - 10574748
Alignment:
Q  19 accgatacacctcaatttatgaggtgtaccatagaagttccctaatttt 67  Q
    |||||||||||||||||||||||||||||| ||||| | |||| |||||    
T  10574700 accgatacacctcaatttatgaggtgtaccgtagaaatccccttatttt 10574748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 12838131 - 12838182
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaattt 66  Q
    |||||||| ||||||||| ||| | ||||||||| |||||||||||||||||    
T  12838131 gagtaccggtacacctcattttgttaggtgtaccttagaagttccctaattt 12838182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 29877749 - 29877702
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||| ||||||  ||||||||||||||||| |||||||||||    
T  29877749 aggagtaccggtacacccaaatttatgaggtgtaccgtagaagttccc 29877702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 36735559 - 36735512
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||| |||||  |||||||||||||||||| |||||||||||    
T  36735559 aggagtaccggtacactccaatttatgaggtgtaccgtagaagttccc 36735512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 47544652 - 47544702
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcc 59  Q
    ||||||||||||||| ||||||||| ||| ||| ||||||||||||||||||    
T  47544652 gaagcaggagtaccggtacacctcattttgtga-gtgtaccatagaagttcc 47544702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 50533949 - 50533898
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaattt 66  Q
    ||||| |||||||||||||||| ||||||||||| |||||| ||||| ||||    
T  50533949 gagtatcgatacacctcaatttgtgaggtgtaccgtagaagctcccttattt 50533898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 9587998 - 9588051
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||| || |||||| ||||||| ||||||| ||||||||||||    
T  9587998 tgaagcaggagtaccggtatacctcactttatga-gtgtaccgtagaagttccct 9588051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 48976927 - 48976874
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||||||||||||| ||| ||| |||| || ||||||||||||    
T  48976927 tgaagcaggagtaccgatacacctcactttgtga-gtgtgccgtagaagttccct 48976874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 17203117 - 17203154
Alignment:
Q  24 tacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  17203117 tacacctcaatttatgaggtgtaccgtagaagctccct 17203154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 34410995 - 34410950
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||| || ||||||||||||| |||||||||||||||||| ||||    
T  34410995 gagtatcggtacacctcaatttgtgaggtgtaccatagaagctccc 34410950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 39084755 - 39084710
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||| |||||||||||||||| ||||||||||| |||||| ||||    
T  39084755 gagtatcgatacacctcaatttgtgaggtgtaccgtagaagctccc 39084710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 40868179 - 40868134
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||| || ||||||||||||||||||||||||| |||||| ||||    
T  40868179 gagtatcggtacacctcaatttatgaggtgtaccgtagaagctccc 40868134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 51610588 - 51610536
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||| ||||||||||||||||||||||| ||  |||||| |||||||||||    
T  51610588 tgaagcaagagtaccgatacacctcaatttacga-atgtaccgtagaagttccc 51610536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 12105212 - 12105157
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaa 63  Q
    ||||||| |||||||| ||||||||| ||| |||| |||||| ||||||||||||||    
T  12105212 tgaagcaagagtaccggtacacctcattttgtgag-tgtaccgtagaagttccctaa 12105157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 24230621 - 24230566
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaa 63  Q
    |||||||||||||||  ||||||||| ||| ||| ||||||| ||||||||||||||    
T  24230621 tgaagcaggagtaccattacacctcactttgtga-gtgtaccgtagaagttccctaa 24230566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 31821622 - 31821571
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||||||||| ||||||||| ||| ||| ||||||| |||||||||||    
T  31821622 gaagcaggagtaccgctacacctcattttgtga-gtgtaccgtagaagttccc 31821571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 38764797 - 38764737
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  38764797 aatatttgaagcaggagtaccgatacacctcaatttgtaaggtgtaccgtagaagttccct 38764737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 17792559 - 17792611
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  17792559 gaagcaggagtaccgatacaccttaatttatga-gtgtaccatagaagttccct 17792611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 6804063 - 6804009
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcc 59  Q
    |||||| || |||||||| |||||||||||||||||||||||||||||| |||||    
T  6804063 tttgaatcaagagtaccggtacacctcaatttatgaggtgtaccatagatgttcc 6804009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 34057874 - 34057824
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaatt 65  Q
    ||||| |||||||||||||||||||||||||||| |||||| |||||||||    
T  34057874 gagtatcgatacacctcaatttatgaggtgtaccgtagaagctccctaatt 34057824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 30777323 - 30777274
Alignment:
Q  9 aagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttc 58  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  30777323 aagcaggagtatcggtacacctcaatttatgaggtgtaccgtagaagttc 30777274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 32887713 - 32887664
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  32887713 aggagtaccggtacacctcaatttatgagatgtaccgtagaagttcccta 32887664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7886224 - 7886259
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaattt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  7886224 aatatttgaagcaggagtaccgatacacctcaattt 7886259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 34520924 - 34520975
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttc 58  Q
    ||||| ||||||| |||||||||||||||| ||||||||||| |||||||||    
T  34520924 tgaagtaggagtatcgatacacctcaatttgtgaggtgtaccgtagaagttc 34520975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 12107539 - 12107481
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaa 63  Q
    ||||||| |||||||||| |||||||||||||||||| |||||| ||||| | ||||||    
T  12107539 tttgaagtaggagtaccggtacacctcaatttatgagatgtaccgtagaactcccctaa 12107481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 27172269 - 27172318
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttc 58  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||||||||    
T  27172269 gaagcaggagtaccgatacaccttaatttatta-gtgtaccatagaagttc 27172318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 2261368 - 2261420
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  2261368 tgaagcaggagtaccggtacacctcactttgtga-gtgtaccatagaagttccc 2261420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 12632952 - 12632903
Alignment:
Q  12 caggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||| || ||||||||||||| ||||||||||| ||||||||||||    
T  12632952 caggagtatcggtacacctcaatttgtgaggtgtaccgtagaagttccct 12632903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 35754514 - 35754465
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaa 54  Q
    ||||||| |||||||||||||||||| |||||||||| |||||| |||||    
T  35754514 tttgaagtaggagtaccgatacaccttaatttatgagatgtaccgtagaa 35754465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 36672062 - 36672010
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||| |||||||| |||||||||||||| || |||||||||||||||||||    
T  36672062 tgaagcaagagtaccggtacacctcaatttacga-gtgtaccatagaagttccc 36672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 12801467 - 12801507
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaag 55  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  12801467 gagtaccggtacacctcaatttatgaggtgtaccgtagaag 12801507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 23870315 - 23870267
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||| |||||| |||||| ||||||||||| ||||||||||||    
T  23870315 aggagtaccggtacaccccaatttgtgaggtgtaccgtagaagttccct 23870267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 2666866 - 2666909
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttc 58  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||    
T  2666866 gagtatcgatacatctcaatttatgaggtgtaccgtagaagttc 2666909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 6982828 - 6982786
Alignment:
Q  16 agtaccgatacacctcaatttatgaggtgtaccatagaagttcc 59  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||    
T  6982828 agtaccgatacacctcattttatga-gtgtaccatagaagttcc 6982786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 31893388 - 31893333
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||| |||||||| || ||||||||||||| ||||||||| | |||||||||||    
T  31893388 tttgaaacaggagtatcggtacacctcaatttgtgaggtgtaacgtagaagttccc 31893333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 118165 - 118214
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttc 58  Q
    ||||||||||||||| ||||||||| ||| ||| |||||||||||||||||    
T  118165 gaagcaggagtaccggtacacctcattttgtga-gtgtaccatagaagttc 118214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 463880 - 463838
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagtt 57  Q
    |||||||||||||||||||||||||| ||||||| || |||||    
T  463880 gagtaccgatacacctcaatttatgaagtgtaccgtaaaagtt 463838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 9508904 - 9508854
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaa 63  Q
    |||||||||| ||||||  ||||| ||||||||||| ||||||||||||||    
T  9508904 aggagtaccggtacaccctaatttgtgaggtgtaccgtagaagttccctaa 9508854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 39722325 - 39722363
Alignment:
Q  24 tacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  39722325 tacacctcaatttatgaggtgtaccgtagaagtttccta 39722363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 5273420 - 5273471
Alignment:
Q  24 tacacctcaatttatgaggtgtaccatagaagttccc---taattttgtttt 72  Q
    ||||||||||||||||||||||||| |||||| ||||   ||||||||||||    
T  5273420 tacacctcaatttatgaggtgtaccgtagaagctcccaattaattttgtttt 5273471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 7128141 - 7128089
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||| || ||||||||| ||| |||| |||||||||||||||||||    
T  7128141 gaagcaggagtatcggtacacctcattttgtgag-tgtaccatagaagttccct 7128089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 9712510 - 9712453
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    |||||||||| ||||||| ||||||| ||||| || | ||||||||||||||| ||||    
T  9712510 tttgaagcagaagtaccggtacaccttaatttgtgtgatgtaccatagaagtttccta 9712453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 40547735 - 40547690
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||| ||||||||| ||| | |||||||||||||||||||||    
T  40547735 gagtaccggtacacctcattttgttaggtgtaccatagaagttccc 40547690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 2879976 - 2879936
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaag 55  Q
    ||||| || ||||||||||||||||||||||||| ||||||    
T  2879976 gagtatcggtacacctcaatttatgaggtgtaccgtagaag 2879936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 5215358 - 5215318
Alignment:
Q  24 tacacctcaatttatgaggtgtaccatagaagttccctaat 64  Q
    |||| |||||||| ||||||||||| |||||||||||||||    
T  5215358 tacatctcaatttgtgaggtgtaccgtagaagttccctaat 5215318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 26439555 - 26439504
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaatt 65  Q
    |||||||||||||||||| ||||| || | |||||| ||||||||||||||||    
T  26439555 aggagtaccgatacaccttaatttgtg-gatgtaccgtagaagttccctaatt 26439504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 28886043 - 28886087
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttcc 59  Q
    ||||| || ||||||||||||| ||||||||||| ||||||||||    
T  28886043 gagtatcggtacacctcaatttgtgaggtgtaccgtagaagttcc 28886087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 41555490 - 41555430
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  41555490 aatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccct 41555430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15362528 - 15362469
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||    
T  15362528 aatatttgaagcaggagtaccggtacacctcaatttataaggtgtaccgtagaagttccc 15362469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34188882 - 34188941
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||| ||||||||||||| | ||||||||| |||||||||||    
T  34188882 aatatttgaagcaggagtaccggtacacctcaatttgtaaggtgtaccgtagaagttccc 34188941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 40287756 - 40287704
Alignment:
Q  10 agcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  40287756 agcaagagtatcgatacacctcaatttatgaggtgtacaatagaagttcccta 40287704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 8362448 - 8362394
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaatttt 67  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| ||||||||||    
T  8362448 aggagtaccagtacacctcaatttatgaggtgtaccgtagaagtcccctaatttt 8362394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 5615745 - 5615790
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||||||||||||| | |||||||||||    
T  5615745 gagtaccgatacacctcaatttatgaggtgtatcgtagaagttccc 5615790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 8333938 - 8333890
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  8333938 aggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccct 8333890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 40810766 - 40810826
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||||||||| ||||||||||||| | |  |||||| ||||||||||||    
T  40810766 aatatttgaagcaggagtaccggtacacctcaatttgtaaaatgtaccgtagaagttccct 40810826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 12002707 - 12002750
Alignment:
Q  16 agtaccgatacacctcaatttatgaggtgtaccatagaagttcc 59  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||    
T  12002707 agtaccgatacacctcaatttgtgaggtgtaccgtagaagttcc 12002750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 12071505 - 12071556
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagt 56  Q
    ||||||| |||||||||| ||||||||||||||||||||||| | |||||||    
T  12071505 tttgaagtaggagtaccggtacacctcaatttatgaggtgtaacgtagaagt 12071556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 2859404 - 2859358
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||| |||||||||||||||||| |||||| ||||||||||||    
T  2859404 gagtaccggtacacctcaatttatgagatgtaccgtagaagttccct 2859358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 38073151 - 38073106
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||||    
T  38073151 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 38073106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 45690544 - 45690499
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||||    
T  45690544 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 45690499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34852414 - 34852355
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||| ||||| |  |||||||||||| |||||| |||| |||||||||||    
T  34852414 aatatttgaagcagaagtactggcacacctcaatttgtgaggtataccgtagaagttccc 34852355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 11088587 - 11088633
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||| | ||||||||||||| ||||||||||| ||||||||||||    
T  11088587 gagtactggtacacctcaatttgtgaggtgtaccgtagaagttccct 11088633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 35895363 - 35895310
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||| ||||||||| ||||||| ||||||| || |||||||||    
T  35895363 tgaagcaggagtaccggtacacctcactttatga-gtgtaccgtaaaagttccct 35895310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 7673346 - 7673294
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||||||||||||| ||||||||| ||| ||| ||||||| ||||||||||||    
T  7673346 gaagcaggagtaccggtacacctcattttgtga-gtgtaccgtagaagttccct 7673294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 25331506 - 25331454
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||||||||||||| ||||||||| ||| ||| ||||||| ||||||||||||    
T  25331506 gaagcaggagtaccggtacacctcattttgtga-gtgtaccgtagaagttccct 25331454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 25740348 - 25740393
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||| || |||||||||||||||||||| |||| |||||||||||    
T  25740348 gagtatcggtacacctcaatttatgaggtataccgtagaagttccc 25740393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 32602354 - 32602302
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||||||||||||| ||||||||| ||| ||| ||||||| ||||||||||||    
T  32602354 gaagcaggagtaccggtacacctcattttgtga-gtgtaccgtagaagttccct 32602302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 5819690 - 5819726
Alignment:
Q  29 ctcaatttatgaggtgtaccatagaagttccctaatt 65  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  5819690 ctcaatttgtgaggtgtaccgtagaagttccctaatt 5819726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 37781902 - 37781866
Alignment:
Q  24 tacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  37781902 tacacctcaatttgtgaggtgtaccgtagaagttccc 37781866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 4491205 - 4491264
Alignment:
Q  3 tatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  4491205 tatttgaaccaggagtaccggtacacctcaatttatgaggtgtaccgtagaagttcccta 4491264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19527071 - 19527130
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  19527071 aatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 19527130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 39103596 - 39103539
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttc 58  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  39103596 aatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttc 39103539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 15060906 - 15060961
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||    
T  15060906 tttgaagcaggagtaccgatgcacctcaatttatgagatgtaccgtagaagttccc 15060961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 12756350 - 12756408
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcc 59  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||    
T  12756350 aatatttgaagcaggaataccggtacacctcaatttgtgaggtgtaccgtagaagttcc 12756408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 49286747 - 49286685
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaa 63  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||||||| |||||| |||||||    
T  49286747 aatatttgaagtaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagctccctaa 49286685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 34927161 - 34927101
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||  ||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  34927161 aatatttgaagatggagtactgatacacctcaatttgtgaggtgtaccgtagaagttccct 34927101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 4695659 - 4695714
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||| ||||||||||| | ||||||||||||||||||||||| |||||||||||    
T  4695659 tttgaaacaggagtaccggtgcacctcaatttatgaggtgtaccctagaagttccc 4695714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31975897 - 31975956
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||| ||||||||||||||||| |||||||||| |||||| |||| |||||||||||    
T  31975897 aatatttaaagcaggagtaccgatagacctcaatttgtgaggtctaccgtagaagttccc 31975956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 53973515 - 53973468
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtacc 48  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||    
T  53973515 aatatttgaagcaggagtaccggtacacctcaatttgtgaggtgtacc 53973468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 19595279 - 19595341
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaa 63  Q
    ||||||||||||||||||| |  ||||||||||||| | ||||||||| ||||||||||||||    
T  19595279 aatatttgaagcaggagtatcagtacacctcaatttgtaaggtgtaccgtagaagttccctaa 19595341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 126933 - 126984
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||||||||||||||||||| ||||||| ||||||| |||||||||||    
T  126933 gaagcaggagtaccgatacacctcattttatga-gtgtaccgtagaagttccc 126984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 34584237 - 34584181
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||| |||||| || ||||||||||||| ||||||||||| ||||||||||||    
T  34584237 tttgaagctggagtatcggtacacctcaatttgtgaggtgtaccgtagaagttccct 34584181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 595351 - 595296
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||| ||||| |||||    
T  595351 tttgaagtaggagtaccggtacacctcaatttgtgaggtgtaccgtagaaattccc 595296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 27950303 - 27950257
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  27950303 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccct 27950257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 3690866 - 3690919
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||| |||| || |||||||||||||||| ||||||||||| |||||||||||    
T  3690866 tgaagtaggaatatcgatacacctcaatttgtgaggtgtaccgtagaagttccc 3690919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 32570729 - 32570774
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||||    
T  32570729 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 32570774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 38961010 - 38960969
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagt 56  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  38961010 gagtatcgatacacctcaatttatgaggtgtacaatagaagt 38960969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 56303194 - 56303242
Alignment:
Q  9 aagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttc 58  Q
    |||||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  56303194 aagcaggagtaccggtacacctcactttatga-gtgtaccatagaagttc 56303242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 4720826 - 4720877
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||||||||||||||||||| ||||||| ||||||| || ||||||||    
T  4720826 gaagcaggagtaccgatacacctcattttatga-gtgtaccgtataagttccc 4720877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 22077717 - 22077773
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||||| |||||||||    |||||||||||| ||||||||||||    
T  22077717 tttgaagcaggagtaccggtacacctcacaaaatgaggtgtaccgtagaagttccct 22077773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 22789629 - 22789581
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||| |||||| |||||| ||||||||||| ||||||||||||    
T  22789629 aggagtaccggtacaccccaatttgtgaggtgtaccgtagaagttccct 22789581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 9579719 - 9579668
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagt 56  Q
    ||||||| |||||||||  |||| |||||||||||||||||||| |||||||    
T  9579719 tttgaagtaggagtaccagtacaactcaatttatgaggtgtaccgtagaagt 9579668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 9585414 - 9585363
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagt 56  Q
    ||||||| |||||||||  |||| |||||||||||||||||||| |||||||    
T  9585414 tttgaagtaggagtaccagtacaactcaatttatgaggtgtaccgtagaagt 9585363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31296589 - 31296530
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||| ||||||| |||||||| ||||||||||||| |||||||| || || ||||||||    
T  31296589 aatatgtgaagcatgagtaccggtacacctcaatttgtgaggtgtcccgtaaaagttccc 31296530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 43349125 - 43349090
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaattt 36  Q
    |||||||||||||||||||||| |||||||||||||    
T  43349125 aatatttgaagcaggagtaccggtacacctcaattt 43349090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 1433858 - 1433809
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttc 58  Q
    ||||||||| ||||| ||||||| |||||||||| ||||||||||||||||    
T  1433858 gaagcaggaataccggtacaccttaatttatgag-tgtaccatagaagttc 1433809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 31999079 - 31999128
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagtt 57  Q
    ||||||| |||||||||||||||||| ||||||| ||||||| ||||||||    
T  31999079 tgaagcaagagtaccgatacacctcactttatga-gtgtaccgtagaagtt 31999128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 52324016 - 52323966
Alignment:
Q  10 agcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||| || ||||||||||||| |||||||||||  ||||||||||    
T  52324016 agcaggagtatcggtacacctcaatttgtgaggtgtaccgcagaagttccc 52323966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 25607735 - 25607694
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagt 56  Q
    |||||||| ||||||||||||| ||||||||||| |||||||    
T  25607735 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagt 25607694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 46663680 - 46663732
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||| |||||||| |||||||||||||| || ||||||| |||||||||||    
T  46663680 tgaagcaagagtaccggtacacctcaatttacga-gtgtaccgtagaagttccc 46663732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 1857159 - 1857210
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||||||||| ||||||||| ||| ||| ||||||| |||||||||||    
T  1857159 gaagcaggagtaccggtacacctcattttgtga-gtgtaccgtagaagttccc 1857210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 18051810 - 18051778
Alignment:
Q  24 tacacctcaatttatgaggtgtaccatagaagt 56  Q
    ||||||||||||||||||||||||| |||||||    
T  18051810 tacacctcaatttatgaggtgtaccgtagaagt 18051778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 21722552 - 21722600
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||||| || |||||| |||||| ||||||||||| ||||||||||||    
T  21722552 aggagtatcggtacaccccaatttgtgaggtgtaccgtagaagttccct 21722600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 25684138 - 25684098
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaag 55  Q
    ||||| ||||||| |||||||||||||||||||| ||||||    
T  25684138 gagtatcgatacatctcaatttatgaggtgtaccgtagaag 25684098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 30060582 - 30060527
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaa 63  Q
    ||||||| ||||| || |||||||||||||| || ||||||| ||||||||||||||    
T  30060582 tgaagcaagagtatcggtacacctcaatttacga-gtgtaccgtagaagttccctaa 30060527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 30168157 - 30168101
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagtt 57  Q
    ||||| || |||||||||| || ||||| ||||||| ||||||||||| ||||||||    
T  30168157 aatatatgtagcaggagtatcggtacacttcaatttgtgaggtgtaccgtagaagtt 30168101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43903420 - 43903479
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  43903420 aatatttgaaggaggagtaccgatacacctcaatttgtgaggtgtaccgtagaagttccc 43903479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29698381 - 29698322
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  29698381 aatatttaaagcaggagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccc 29698322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 32121958 - 32121899
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||    
T  32121958 aatatttgaagcaggagtaccggtacacctcactttgtgaggtgtaccgtagaagttccc 32121899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 35375556 - 35375511
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||    
T  35375556 gagtaccgatacacctcaatttgtgaggtgtaccgtagaagttccc 35375511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 40474189 - 40474245
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaat 64  Q
    |||||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||    
T  40474189 tgaagcaggagtaccggtacacctcactttatga-gtgtaccatagaagttccttaat 40474245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8353121 - 8353067
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaag 55  Q
    |||||||||||||| |||||| |||||||||||||| | ||||||||| ||||||    
T  8353121 aatatttgaagcagaagtaccaatacacctcaatttgtaaggtgtaccgtagaag 8353067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 48795484 - 48795438
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  48795484 gagtaccggtacacctcaatttgtgaggtgtaccgtagaagttccct 48795438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 8966286 - 8966338
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||    
T  8966286 gaagcaggagtaccggtacaccttaatttatga-gtgtaccgtagaagttccct 8966338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 14998192 - 14998147
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||||||||| |||||| ||||||||||| |||||||||||    
T  14998192 gagtaccgatacaccacaatttgtgaggtgtaccgtagaagttccc 14998147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 29815482 - 29815535
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||||| | || ||||||||||||| ||||||||||| |||||||||||    
T  29815482 tgaagcaggagcatcggtacacctcaatttgtgaggtgtaccgtagaagttccc 29815535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 50029802 - 50029754
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagtt 57  Q
    ||||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  50029802 gaagcaggagtaccgatacaccttagtttatga-gtgtaccatagaagtt 50029754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 52776494 - 52776453
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagt 56  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  52776494 gagtaccggtacacctcaatttatgaggtgtaccgtagaagt 52776453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 11510772 - 11510716
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||||| |||||||||| | ||||||||||||||||||||| | ||||||| ||||    
T  11510772 tttgaagtaggagtaccggtgcacctcaatttatgaggtgtatcgtagaagtcccct 11510716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 15804619 - 15804667
Alignment:
Q  10 agcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttc 58  Q
    |||||||||| || |||||||||||| |||||||||||| |||||||||    
T  15804619 agcaggagtatcggtacacctcaattgatgaggtgtaccgtagaagttc 15804667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 26850281 - 26850332
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||| |||||||||||||||||||| ||||| | |||||||||||||||||||    
T  26850281 gaagtaggagtaccgatacacctcattttat-aagtgtaccatagaagttccc 26850332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 35501145 - 35501196
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  35501145 gaagcaggagtaccggtacacctcattttgtga-gtgtaccatagaagttccc 35501196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 1129181 - 1129127
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttcccta 62  Q
    |||||||||||||||| ||||||||| ||| ||| ||||||| |||||||||||||    
T  1129181 tgaagcaggagtaccggtacacctcactttgtga-gtgtaccgtagaagttcccta 1129127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 9252202 - 9252260
Alignment:
Q  2 atatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||| ||||||| |||||||| |||||||||||||| || ||||||| ||||||||||||    
T  9252202 atatatgaagcaagagtaccggtacacctcaatttacga-gtgtaccgtagaagttccct 9252260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 35844869 - 35844826
Alignment:
Q  18 taccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||||||||||||||||| |||||||||||||  |||||||||    
T  35844869 taccgatacacctcaatttgtgaggtgtaccattcaagttccct 35844826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 52058561 - 52058514
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||| |||||| |||||| ||||||||||| |||||||||||    
T  52058561 aggagtaccggtacaccccaatttgtgaggtgtaccgtagaagttccc 52058514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 24397745 - 24397791
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||| || ||||||||||||| |||||||||||||||||| |||||    
T  24397745 gagtatcggtacacctcaatttgtgaggtgtaccatagaagctccct 24397791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 25834584 - 25834637
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||| |||| |||| ||||||| ||||||| ||||||||||||    
T  25834584 tgaagcaggagtaccggtacatctcactttatga-gtgtaccgtagaagttccct 25834637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 29385042 - 29385096
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaatttt 67  Q
    ||||||| || ||||||||||||| ||||||||||| ||||| |||||| |||||    
T  29385042 aggagtatcggtacacctcaatttgtgaggtgtaccgtagaaattcccttatttt 29385096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 40478112 - 40478165
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    |||||||||||||||| ||||||||| ||| ||| ||||||| ||||||||||||    
T  40478112 tgaagcaggagtaccggtacacctcactttgtga-gtgtaccgtagaagttccct 40478165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 41982437 - 41982391
Alignment:
Q  13 aggagtaccgatacacctcaatttatgaggtgtaccatagaagttcc 59  Q
    |||||||||| |||||| |||||| ||||||||||| ||||||||||    
T  41982437 aggagtaccggtacaccccaatttgtgaggtgtaccgtagaagttcc 41982391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 47175830 - 47175872
Alignment:
Q  15 gagtaccgatacacctcaatttatgaggtgtaccatagaagtt 57  Q
    ||||| || ||||||||||||||||||||||||| ||||||||    
T  47175830 gagtatcggtacacctcaatttatgaggtgtaccgtagaagtt 47175872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 1021329 - 1021381
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||||||||||||||||||||||| ||| ||| ||||| | ||||||||||||    
T  1021329 gaagcaggagtaccgatacacctcattttgtga-gtgtatcgtagaagttccct 1021381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 44379466 - 44379414
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||| ||||||||| ||| ||| ||||||| |||||||||||    
T  44379466 tgaagcaggagtaccggtacacctcactttgtga-gtgtaccgtagaagttccc 44379414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 4393517 - 4393549
Alignment:
Q  24 tacacctcaatttatgaggtgtaccatagaagt 56  Q
    ||||||||||||||||||||||||| |||||||    
T  4393517 tacacctcaatttatgaggtgtaccgtagaagt 4393549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 15298267 - 15298211
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccct 61  Q
    ||||||| | |||||||  ||||||||||||||||||||||||  ||||||| ||||    
T  15298267 tttgaagtaagagtaccagtacacctcaatttatgaggtgtacagtagaagtcccct 15298211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 35748974 - 35748915
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaatttt 67  Q
    ||||||| ||||||||||||||||| ||||| || ||||| | |||||||||||| |||||    
T  35748974 tgaagcaagagtaccgatacacctctatttacga-gtgtatcgtagaagttcccttatttt 35748915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 53289281 - 53289230
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||||||||||||| ||||||||| ||| ||| ||||||| |||||||||||    
T  53289281 gaagcaggagtaccggtacacctcattttgtga-gtgtaccgtagaagttccc 53289230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 214487 - 214546
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||| |||||||||||    
T  214487 aatatttgaagcaggagtaccggtacaattcaatttatgaggtgtaccgtagaagttccc 214546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11000 - 11066
Alignment:
Q  1 aatatttgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccctaatttt 67  Q
    |||||||||||||| |||| || ||||||||||||| |||||||||||  |||||||||| ||||||    
T  11000 aatatttgaagcagtagtatcggtacacctcaatttgtgaggtgtaccgcagaagttccccaatttt 11066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0721 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0721
Description:

Target: scaffold0721; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 6641 - 6585
Alignment:
Q  5 tttgaagcaggagtaccgatacacctcaa-tttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||||||| |||||||| |||||||| |||||| |||||||||||    
T  6641 tttgaagcaggagtaccgatgcacctcaattttatgagatgtaccgtagaagttccc 6585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 17014 - 17067
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    ||||| ||||||| || ||||||||||||| ||||||||||| |||||||||||    
T  17014 tgaagtaggagtatcggtacacctcaatttgtgaggtgtaccgtagaagttccc 17067  T

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Target: scaffold0067 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 41750 - 41790
Alignment:
Q  14 ggagtaccgatacacctcaatttatgaggtgtaccatagaa 54  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  41750 ggagtatcgatacacctcaatttatgaggtgtaccgtagaa 41790  T

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Target: scaffold0923 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0923
Description:

Target: scaffold0923; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 39 - 91
Alignment:
Q  7 tgaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||||| ||||||||| ||| ||| ||||||| |||||||||||    
T  39 tgaagcaggagtaccggtacacctcactttgtga-gtgtaccgtagaagttccc 91  T

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Target: scaffold1319 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1319
Description:

Target: scaffold1319; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 94 - 43
Alignment:
Q  8 gaagcaggagtaccgatacacctcaatttatgaggtgtaccatagaagttccc 60  Q
    |||||||||||||| |||||||||| ||| ||| ||||||| |||||||||||    
T  94 gaagcaggagtaccaatacacctcattttgtga-gtgtaccgtagaagttccc 43  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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