View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_112 (Length: 255)
Name: NF1297_low_112
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_112 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 31111803 - 31111973
Alignment:
| Q |
30 |
agaatgcgtgtctcgctcaagtagaagaaaatcaatataaaatttctgctgcaaatgtgacttaaattaaggtcgttcaacgaaatcaacaaaccgccac |
129 |
Q |
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| T |
31111803 |
agaatgcgtgtctcactcaagtagaagaaaatcaatataaaatttctgctgcaaatgtgacttaaattaaggtcgttcaacgaaatcaacaaaccgccac |
31111902 |
T |
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| Q |
130 |
tccaatgaatgtggtagaaaatgttgcttctgagaaagatgaaaatcaggatccatggcacaaagttcctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31111903 |
tccaatgaatgtggtagaaaatgttgcttctgagaaagatgaaaatcaggatccatggcacaaagttcctt |
31111973 |
T |
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