View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_113 (Length: 255)
Name: NF1297_low_113
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_113 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1712566 - 1712340
Alignment:
| Q |
1 |
aaataaaacacattttattattgaaaccgaatatattaagtaatttttcaagaaggatatattgttttaagagaaatggtaacaaatatcttaataatat |
100 |
Q |
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| T |
1712566 |
aaataaaactcattttattattgaaaccgagtatattaagtaatttttcaagaaggatatattgttttaagagaaatggtaacaaatatcttaataatat |
1712467 |
T |
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| Q |
101 |
tagttaagaagtctaaagtgaaattttttattgaaaatgatgcattcaatgtttgaaactttataaaagaactttttctatatagaaattctacatcaat |
200 |
Q |
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| T |
1712466 |
tagttaagaagtccaaagtgaaattttttattgaaaatgatgcattcaatgtttgaaactttataaaagaactttttctatatagaaattctacatcaat |
1712367 |
T |
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| Q |
201 |
tttctattttaatttagtgtatttgtt |
227 |
Q |
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| T |
1712366 |
tttctgttttaatttagtgtatttgtt |
1712340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 45153493 - 45153580
Alignment:
| Q |
95 |
taatattagttaagaagtctaaagtg-aaattttttattgaaaatgatgcattcaatgt-ttgaaactttataaaagaactttttcta |
180 |
Q |
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| T |
45153493 |
taataatagttaagaattctaaagaataaattttatcttgaaaatggtgcattcaatgcattgaaactttataaagtaactttttcta |
45153580 |
T |
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