View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_114 (Length: 253)
Name: NF1297_low_114
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_114 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 18071260 - 18071466
Alignment:
| Q |
1 |
tcttgtatttttaaggctagaaatgtagtaagcacattgcatcttgttagatacagatattagtcatacttgttagttatactattannnnnnnnaagct |
100 |
Q |
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| T |
18071260 |
tcttgtatttttaaggctagaaatgtagtaagcacattgcatcttgttagatacagatattagtcatacttgttagttatactatttttttttttaagct |
18071359 |
T |
|
| Q |
101 |
agttagttagactagttaatagttctcaatcactatataagtttcactgtacnnnnnnnnnnnnnaagaaaggttcactgtactaaatatgatcatatga |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18071360 |
agttagttagactagttaatagttctcaatgactatataagtttcactgtactttttctttttttaagaaaggttcactgtactaaatatgatcatatga |
18071459 |
T |
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| Q |
201 |
gaacagc |
207 |
Q |
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||||||| |
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| T |
18071460 |
gaacagc |
18071466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 27418932 - 27419085
Alignment:
| Q |
1 |
tcttgtatttttaaggctagaaatgtagtaagcacattgcatcttgttagatacagatattagtcatacttgttagttata-ctattannnnnnnnaagc |
99 |
Q |
| |
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|||||||||| ||||||||||| | ||| | ||||||||||||||||||||||| |||||||||||| | |||||||||| | || |||| |
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| T |
27418932 |
tcttgtatttctaaggctagaagtttagcatccacattgcatcttgttagatacaaatattagtcatattagttagttatagtttttttttttttaaagc |
27419031 |
T |
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| Q |
100 |
tagttagttagactagttaatagttctc-aatcactatataagtttcactgtac |
152 |
Q |
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|||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
27419032 |
tagttacttagactagttaatagttctcaaatgactatataagtttcactgtac |
27419085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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