View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_117 (Length: 252)
Name: NF1297_low_117
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_117 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 19571940 - 19572164
Alignment:
| Q |
1 |
gtgaaggacagggttccctaatttaagagaagcgcacatatttttgcattaagatcagacaacttagattacgcaacaacaaaatcaattttaaaccgtc |
100 |
Q |
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| T |
19571940 |
gtgaaggacggggttccctaatctaagagaagcacacatatttatgcattaagatcagaaaacttagattacgcaataacaaaatcaattttaaaccatc |
19572039 |
T |
|
| Q |
101 |
tctgatnnnnnnnnn-tcaactttaaactatctttgccattgattaagatcgaccggttgaaattgaaaaccggagttgtaatgtttaagagaccannnn |
199 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19572040 |
tctgataaaaaaaaaatcaactttaaactatctttgccattgattaagatcgaccggttgaaattgaaaaccggagttgtaatgtttaagagaccatttt |
19572139 |
T |
|
| Q |
200 |
nnncgacaaattgtgacatgccatt |
224 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
19572140 |
tttcgacaaattgtgacatgccatt |
19572164 |
T |
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