View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_120 (Length: 252)
Name: NF1297_low_120
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_120 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2330775 - 2330540
Alignment:
| Q |
1 |
attaacttaagaaatccatctagattaaaaccccaaatgaaaattaacatgtcaaaatgcctgaaaatatcttcttcnnnnnnnnnnnnnnncaaaagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2330775 |
attaacttaagaaatccatctagattaaaaccccaaatgaaaattaacatgtcaaaatgcctgaaaatatcttctttttttttttgttttttcaaaagca |
2330676 |
T |
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| Q |
101 |
aaattaaaaaagaaccaacttgagaatatcattataatggtcaaattcaccaatcattctctccttgcagttgtgctactactcttgactcttgaggtaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| |
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| T |
2330675 |
aaattaaaaaagaaccaacttgagaatatcattataatggtcaaattcaccaatcattctctccttgaagttgtgctactaat----actcttgaggtaa |
2330580 |
T |
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| Q |
201 |
tctgcccttattgcccataattgctcacccactgttttcat |
241 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
2330579 |
tctg-ccttattgcccataattgctcacccactgttttcat |
2330540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 47776596 - 47776455
Alignment:
| Q |
93 |
caaaagcaaaattaaaaaagaaccaacttgagaatatcattataatggtcaaattcaccaatcattctctccttgcagttgtgctactactcttgactct |
192 |
Q |
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| T |
47776596 |
caaaagcaaaattaaaaaagaaccaacttgagaatatcattataatggtcaaattcaccaatcattctctccttgcagttgtgctactactc-------t |
47776504 |
T |
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| Q |
193 |
tgaggtaatctgcccttattgcccataattgctcacccactgttttcat |
241 |
Q |
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| T |
47776503 |
tgaggtaatctgcccttattgcccataattgctcacccactgttttcat |
47776455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 47776721 - 47776656
Alignment:
| Q |
1 |
attaacttaagaaatccatctagattaaaaccccaaatgaaaattaacatgtcaaaatgcctgaaa |
66 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47776721 |
attaacttaagaaatccatctagattaaaaccccaaatgaaaattaacatgtcaaaatgcctgaaa |
47776656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6606937 - 6606862
Alignment:
| Q |
1 |
attaacttaagaaatccatctagattaaaaccccaaatgaaaattaacatgtcaaaatgcctgaaaatatcttctt |
76 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6606937 |
attaacttaagaaatccatctagattaaaaccccaaatgaaaattaacatgtcaaaatgcctgaaaatatcttctt |
6606862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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