View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_121 (Length: 251)
Name: NF1297_low_121
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_121 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4146108 - 4146351
Alignment:
| Q |
1 |
caactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttcaatccttaagccctttagtctctttatgtgtatatataaatagttg |
100 |
Q |
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| T |
4146108 |
caactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttcaatccttaagccctttagtctctttatgtgtatatataaatagttg |
4146207 |
T |
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| Q |
101 |
ttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgtatagannnnnnngttaagtttgatgcctcgtcgaactttgagttt |
200 |
Q |
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| T |
4146208 |
ttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgtatagatttttttgttaagtttgatgcctcgtcgaactttgagttt |
4146307 |
T |
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| Q |
201 |
ctttgtcacgtgtctacttcgacgaatcttttgaatattcttcg |
244 |
Q |
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| T |
4146308 |
ctttgtcacgtgtctacttcgacgaatcttttgaattttcttcg |
4146351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 41430474 - 41430404
Alignment:
| Q |
174 |
tttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaatattcttcg |
244 |
Q |
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| T |
41430474 |
tttgctgcctcatcaaactttgagtttctttgtcacgagtctcctttggcggatcttttgaattttcttcg |
41430404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 12734679 - 12734744
Alignment:
| Q |
179 |
tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaatattcttcg |
244 |
Q |
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| T |
12734679 |
tgcctcatcaaactttgagtttctttatcacgagtctcctccaacggatcttttgaatcttcttcg |
12734744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 31525096 - 31525149
Alignment:
| Q |
191 |
ctttgagtttctttgtcacgtgtctacttcgacgaatcttttgaatattcttcg |
244 |
Q |
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| T |
31525096 |
ctttgagtttctttgtcacgagtctcctccaacggatcttttgaatcttcttcg |
31525149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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