View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_low_127 (Length: 251)

Name: NF1297_low_127
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_low_127
NF1297_low_127
[»] chr3 (17 HSPs)
chr3 (1-240)||(51377265-51377504)
chr3 (116-183)||(8327165-8327231)
chr3 (114-182)||(8326478-8326548)
chr3 (116-162)||(5113198-5113244)
chr3 (116-162)||(20586072-20586118)
chr3 (116-162)||(20586586-20586632)
chr3 (116-162)||(26006146-26006192)
chr3 (116-162)||(5113710-5113756)
chr3 (116-162)||(24394736-24394782)
chr3 (116-162)||(36992175-36992221)
chr3 (116-162)||(37017615-37017661)
chr3 (117-162)||(45000316-45000361)
chr3 (145-213)||(2389769-2389836)
chr3 (116-156)||(26006786-26006826)
chr3 (116-191)||(31598767-31598842)
chr3 (149-209)||(43768714-43768773)
chr3 (145-209)||(44406227-44406290)
[»] chr1 (11 HSPs)
chr1 (116-240)||(41134556-41134681)
chr1 (115-162)||(32538504-32538551)
chr1 (116-190)||(17151002-17151076)
chr1 (154-203)||(49961442-49961490)
chr1 (145-216)||(4124730-4124800)
chr1 (111-162)||(32537640-32537691)
chr1 (115-162)||(43755848-43755895)
chr1 (116-162)||(38328888-38328934)
chr1 (116-162)||(38468906-38468952)
chr1 (116-162)||(43756349-43756395)
chr1 (116-162)||(38469287-38469333)
[»] chr4 (15 HSPs)
chr4 (113-240)||(52748791-52748917)
chr4 (114-240)||(52492176-52492297)
chr4 (116-162)||(5235374-5235420)
chr4 (116-162)||(6933821-6933867)
chr4 (116-162)||(6934504-6934550)
chr4 (116-162)||(20174970-20175016)
chr4 (176-231)||(17512139-17512194)
chr4 (116-155)||(39413630-39413669)
chr4 (176-226)||(34372217-34372267)
chr4 (145-241)||(31911390-31911486)
chr4 (145-238)||(32449347-32449438)
chr4 (145-241)||(32450140-32450236)
chr4 (122-162)||(3167479-3167519)
chr4 (145-209)||(20351266-20351329)
chr4 (145-209)||(39429892-39429955)
[»] chr5 (17 HSPs)
chr5 (123-174)||(461193-461244)
chr5 (96-162)||(12330128-12330194)
chr5 (116-162)||(24027187-24027233)
chr5 (122-182)||(25992746-25992807)
chr5 (117-157)||(3596300-3596340)
chr5 (130-182)||(25993550-25993602)
chr5 (145-216)||(1282915-1282985)
chr5 (116-162)||(3595777-3595823)
chr5 (116-162)||(7858327-7858373)
chr5 (116-186)||(8320875-8320945)
chr5 (116-162)||(8321389-8321435)
chr5 (145-203)||(9923418-9923475)
chr5 (116-162)||(12330664-12330710)
chr5 (116-162)||(31078456-31078502)
chr5 (115-162)||(29759596-29759643)
chr5 (121-157)||(461950-461986)
chr5 (122-162)||(36912252-36912292)
[»] chr8 (6 HSPs)
chr8 (113-155)||(30846013-30846055)
chr8 (116-182)||(33608400-33608466)
chr8 (145-209)||(7054120-7054183)
chr8 (116-157)||(30846503-30846544)
chr8 (145-209)||(42345424-42345487)
chr8 (145-209)||(42346060-42346123)
[»] chr6 (5 HSPs)
chr6 (116-162)||(7635637-7635683)
chr6 (116-162)||(7635124-7635170)
chr6 (116-162)||(18290497-18290543)
chr6 (116-162)||(18290215-18290261)
chr6 (115-156)||(12999485-12999526)
[»] chr7 (10 HSPs)
chr7 (116-161)||(14735357-14735402)
chr7 (116-157)||(25137932-25137973)
chr7 (143-238)||(29007124-29007219)
chr7 (116-162)||(25137412-25137458)
chr7 (145-213)||(23632953-23633019)
chr7 (117-162)||(39045240-39045285)
chr7 (115-162)||(33686925-33686972)
chr7 (116-162)||(30414181-30414227)
chr7 (145-209)||(30916451-30916514)
chr7 (116-156)||(33687757-33687797)
[»] chr2 (12 HSPs)
chr2 (117-162)||(6609552-6609597)
chr2 (115-186)||(6610021-6610092)
chr2 (116-155)||(15561541-15561580)
chr2 (116-186)||(15562018-15562088)
chr2 (116-162)||(16903899-16903945)
chr2 (116-162)||(30899390-30899436)
chr2 (116-162)||(30899903-30899949)
chr2 (111-162)||(7994575-7994626)
chr2 (116-162)||(37996585-37996631)
chr2 (123-216)||(44094765-44094858)
chr2 (123-232)||(8905412-8905524)
chr2 (149-209)||(20991974-20992033)
[»] scaffold0508 (2 HSPs)
scaffold0508 (116-162)||(4133-4179)
scaffold0508 (116-162)||(4626-4672)
[»] scaffold0022 (1 HSPs)
scaffold0022 (116-162)||(61574-61620)
[»] scaffold0006 (1 HSPs)
scaffold0006 (116-162)||(202285-202331)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 51377265 - 51377504
Alignment:
Q  1 aaaataccctttaaaattgatagtaatgaaataaattggttcatgtaaaaatcacgtgattttgttctatcttggatctgcttaagtttatgtggggatc 100  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  51377265 aaaataccctttaaaattgatagtaatcaaacaaattggttcatgtaaaaatcatgtgattttgttctatcttggatctccttaagtttatgtggggatc 51377364  T
Q  101 aatgattacctttagggtgaagtttagcatgggaaagactagtttttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgatt 200  Q
    |||||||||||||||||||| |||||||||||||||  ||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51377365 aatgattacctttagggtgaggtttagcatgggaaatgctagttttttctaccatggaaaagcttttttctgaccattagattaaagaggagtattgatt 51377464  T
Q  201 ttaccatggtctgtctgcagtatattattttctctttcat 240  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  51377465 ttaccatggtctgtctgcattatattattttctctttcat 51377504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 8327231 - 8327165
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaagcttttttctgacaattagatt 183  Q
    |||| ||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||| ||||||||    
T  8327231 ggtggagtttagcatgggaaagactaattttttccaccatgggaaag-ttttttctgaccattagatt 8327165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 8326478 - 8326548
Alignment:
Q  114 agggtgaagtttagcatgggaaaga--ctagtttttcccaccatggaaaagcttttttctgacaattagat 182  Q
    |||||| |||||||||||||||| |  ||||||||||||| ||||| ||||||||||||| || |||||||    
T  8326478 agggtggagtttagcatgggaaaaaggctagtttttcccatcatgggaaagcttttttctaaccattagat 8326548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 5113198 - 5113244
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  5113198 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 5113244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 20586072 - 20586118
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  20586072 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 20586118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 20586632 - 20586586
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  20586632 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 20586586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 26006146 - 26006192
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  26006146 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 26006192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 5113756 - 5113710
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| | ||||||||||||| ||||    
T  5113756 ggtgaagtttagcatgggaaagcctaatctttcccaccatgggaaag 5113710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 24394782 - 24394736
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||  ||| ||||||||||||||| ||||    
T  24394782 ggtgaagtttagcatgggaaatgctaatttttcccaccatgggaaag 24394736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 36992221 - 36992175
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||| ||||||||| ||| ||||||||||||||| ||||    
T  36992221 ggtgaagtttagtatgggaaaggctaatttttcccaccatgggaaag 36992175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 37017661 - 37017615
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||| ||||||||| ||| ||||||||||||||| ||||    
T  37017661 ggtgaagtttagtatgggaaaggctaatttttcccaccatgggaaag 37017615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 45000316 - 45000361
Alignment:
Q  117 gtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    ||||||||||||||||||||| ||| |||||||||| |||| ||||    
T  45000316 gtgaagtttagcatgggaaaggctaatttttcccactatgggaaag 45000361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 2389769 - 2389836
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatggtctg 213  Q
    |||||||| |||||||| ||||||| | || |||  |||||||| |||||||||||||| |||||||||    
T  2389769 tttcccactatggaaaaactttttt-taaccatttaattaaagaagagtattgattttatcatggtctg 2389836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 26006826 - 26006786
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatg 156  Q
    |||||||||||||||||||||| ||| ||||||||| ||||    
T  26006826 ggtgaagtttagcatgggaaaggctaatttttcccatcatg 26006786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 31598842 - 31598767
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtt-tttcccaccatggaaaagcttttttctgacaattagattaaagagga 191  Q
    ||||||||||||||||| |||||  |||| ||||||||||||| |||| ||||||   ||| |||||||||||||||    
T  31598842 ggtgaagtttagcatggaaaagaaaagttgtttcccaccatgggaaag-tttttttgaacagttagattaaagagga 31598767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 43768773 - 43768714
Alignment:
Q  149 ccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatgg 209  Q
    ||||||||| |||| |||||||  || ||||||||||||||||||||| |||||| |||||    
T  43768773 ccaccatgggaaagtttttttca-accattagattaaagaggagtattaattttatcatgg 43768714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 44406227 - 44406290
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatgg 209  Q
    ||||||||||||||||||  |||||| | || |||||||||||| ||||||| |||||| |||||    
T  44406227 tttcccaccatggaaaagtctttttcagcca-ttagattaaagaagagtattaattttatcatgg 44406290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 41134681 - 41134556
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaagctttttt-ctgacaattagattaaagaggagtattgattttaccatggtctgt 214  Q
    ||||| |||||||||| ||||  ||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||| |||||||||||||||||    
T  41134681 ggtgaggtttagcatgagaaatgctagtttttcccaccatgggaaagttttttttctgaccattagattaaagaggagtattaattttaccatggtctgt 41134582  T
Q  215 ctgcagtatattattttctctttcat 240  Q
    ||||| ||||||||||||||||||||    
T  41134581 ctgcattatattattttctctttcat 41134556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 32538551 - 32538504
Alignment:
Q  115 gggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  32538551 gggtgaagtttagcatgggaaaggctaatttttcccaccatggaaaag 32538504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 17151002 - 17151076
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaagcttttttctgacaattagattaaagagg 190  Q
    ||||| |||||||||||||||| || |||||||||||||||| |||| | |||| |||| | |||||||||||||    
T  17151002 ggtgaggtttagcatgggaaaggctggtttttcccaccatgggaaagttattttttgaccactagattaaagagg 17151076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 49961490 - 49961442
Alignment:
Q  154 atggaaaagcttttttctgacaattagattaaagaggagtattgatttta 203  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  49961490 atggaaaag-ttttttctgacaattagattaacgaggagtattgatttta 49961442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 4124730 - 4124800
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatggtctgtct 216  Q
    |||||||| |||| |||| ||||||||||| |||||||||| ||||||||||||||||| ||| | ||||||    
T  4124730 tttcccactatgggaaag-ttttttctgaccattagattaatgaggagtattgattttatcatagactgtct 4124800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 32537640 - 32537691
Alignment:
Q  111 tttagggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||| |||||||||| ||| ||||||||||||||| ||||    
T  32537640 tttagggtgaagtttaacatgggaaaggctaatttttcccaccatgggaaag 32537691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 43755848 - 43755895
Alignment:
Q  115 gggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  43755848 gggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 43755895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 38328934 - 38328888
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  38328934 ggtgaagtttagcatgggaaagactaatttttcccatcatgggaaag 38328888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 38468906 - 38468952
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  38468906 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 38468952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 43756395 - 43756349
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  43756395 ggtgaagtttagcatgggaaagactaattttttccaccatgggaaag 43756349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 38469333 - 38469287
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||| ||||||||| ||||    
T  38469333 ggtgaagtttagcatgggaaaggctaattttttccaccatgggaaag 38469287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 113 - 240
Target Start/End: Original strand, 52748791 - 52748917
Alignment:
Q  113 tagggtgaagtttagcatgggaaagactagtttttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatggtct 212  Q
    ||||||||  ||||||||||||||| ||| ||||| ||| |||| |||||||||||| | || |||| ||||||||||||||||||||||| |||| |||    
T  52748791 tagggtgagctttagcatgggaaaggctaattttttccatcatgaaaaagctttttttt-accattatattaaagaggagtattgattttatcatgatct 52748889  T
Q  213 gtctgcagtatattattttctctttcat 240  Q
    || |||| ||||||||||||||||||||    
T  52748890 gtttgcattatattattttctctttcat 52748917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 114 - 240
Target Start/End: Original strand, 52492176 - 52492297
Alignment:
Q  114 agggtgaagtttagcatgggaaagactagtttttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatggtctg 213  Q
    ||||||| |||| ||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||| | |||||||||||||||||||||         
T  52492176 agggtgaggtttcgcatgggaaaggctagtttttcc-accatgggaaagcttttttctgactattagattataaaggagtattgattttaccatg----t 52492270  T
Q  214 tctgcagtatattattttctctttcat 240  Q
    ||||||  |||||||||||||||||||    
T  52492271 tctgcataatattattttctctttcat 52492297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 5235374 - 5235420
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  5235374 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 5235420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 6933821 - 6933867
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  6933821 ggtgaagtttagcatgggaaagactaattttttccatcatggaaaag 6933867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 6934550 - 6934504
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  6934550 ggtgaagtttagcatgggaaagactaattttttccaccatgggaaag 6934504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 20174970 - 20175016
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  20174970 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 20175016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 17512194 - 17512139
Alignment:
Q  176 attagattaaagaggagtattgattttaccatggtctgtctgcagtatattatttt 231  Q
    ||||||||||||||| |||||||||||| |||||||| | |||| |||||| ||||    
T  17512194 attagattaaagaggtgtattgattttatcatggtctatgtgcactatattttttt 17512139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 39413669 - 39413630
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccat 155  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  39413669 ggtgaagtttagaatgggaaagactaatttttcccaccat 39413630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 34372267 - 34372217
Alignment:
Q  176 attagattaaagaggagtattgattttaccatggtctgtctgcagtatatt 226  Q
    ||||||||||||||||||||| |||||| ||||| |||||| || ||||||    
T  34372267 attagattaaagaggagtattaattttatcatggactgtctacactatatt 34372217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 31911486 - 31911390
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatggtctgtctgcagtatattattt-tctctttcatc 241  Q
    |||||||||||||||||| | |||| |||| || ||||||| ||||||||  ||||||| |||||||| ||  || |||||| ||| |||||||||||    
T  31911486 tttcccaccatggaaaag-tattttttgaccatcagattaaggaggagtaccgattttatcatggtctatccacactatattttttctctctttcatc 31911390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 32449347 - 32449438
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatggtctgtctgcagtatattattttctctttc 238  Q
    |||||||||||||||||   ||||| ||||||||||||||||||||| ||   |||||| |||||||| ||  || |||||| |||||||||||    
T  32449347 tttcccaccatggaaaaatattttt-tgacaattagattaaagaggaataccaattttatcatggtctatccacactatatt-ttttctctttc 32449438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 32450236 - 32450140
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatggtctgtctgcagtatattattt-tctctttcatc 241  Q
    |||||||||||||||||| | |||| |||| || ||||||| ||||||||  ||||||| |||||||| ||  || |||||| ||| |||||||||||    
T  32450236 tttcccaccatggaaaag-tattttttgaccatcagattaaggaggagtaccgattttatcatggtctatccacactatattttttctctctttcatc 32450140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 3167519 - 3167479
Alignment:
Q  122 gtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    ||||||||||||||||| || ||||||||||||||| ||||    
T  3167519 gtttagcatgggaaagattactttttcccaccatgggaaag 3167479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 20351329 - 20351266
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatgg 209  Q
    |||||||||||| ||||| |||||||  || |||||||||||||| |||||| |||||| |||||    
T  20351329 tttcccaccatgaaaaagtttttttca-actattagattaaagagaagtattaattttatcatgg 20351266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 39429955 - 39429892
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatgg 209  Q
    ||||||||||||| |||| |||||||  || |||| |||||||||||||||| |||||| |||||    
T  39429955 tttcccaccatgggaaagtttttttca-accattaaattaaagaggagtattaattttatcatgg 39429892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 461193 - 461244
Alignment:
Q  123 tttagcatgggaaagactagtttttcccaccatggaaaagcttttttctgac 174  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||||||||||    
T  461193 tttagcatgggaaaggctagttttttccaccatgaaaaagcttttttctgac 461244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 12330128 - 12330194
Alignment:
Q  96 ggatcaatgattacctttagggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||| ||||||||  | ||||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  12330128 ggataaatgattaaatgtagggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 12330194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 24027187 - 24027233
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||    
T  24027187 ggtgaagtttagcatgggaaaggctaatttttcccaccatggaaaag 24027233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 25992746 - 25992807
Alignment:
Q  122 gtttagcatgggaaagactagtttttcccaccatggaaaagc-ttttttctgacaattagat 182  Q
    ||||||| |||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||    
T  25992746 gtttagcttgggaaaggctagtttttcccaccatgggaaagctttttttctgaccattagat 25992807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 3596340 - 3596300
Alignment:
Q  117 gtgaagtttagcatgggaaagactagtttttcccaccatgg 157  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  3596340 gtgaagtttagcatgggaaagactaatttttcccaccatgg 3596300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 25993602 - 25993550
Alignment:
Q  130 tgggaaagactagtttttcccaccatggaaaagcttttttctgacaattagat 182  Q
    |||||||| ||||||||||||||||||| |||||| ||||||||| |||||||    
T  25993602 tgggaaaggctagtttttcccaccatgggaaagctcttttctgaccattagat 25993550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 1282985 - 1282915
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatggtctgtct 216  Q
    |||||||| |||| |||| ||||||||||| |||||||||| ||||||||||||||||| ||| | ||||||    
T  1282985 tttcccactatgggaaag-ttttttctgaccattagattaatgaggagtattgattttatcatagactgtct 1282915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 3595777 - 3595823
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  3595777 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 3595823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 7858327 - 7858373
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  7858327 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 7858373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 8320875 - 8320945
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaagcttttttctgacaattagattaaa 186  Q
    |||||||||||||||||||||| ||| ||||||||||||||| |||| |  ||| | || |||||||||||    
T  8320875 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccattagattaaa 8320945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 8321435 - 8321389
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  8321435 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 8321389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 9923418 - 9923475
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgatttta 203  Q
    |||||||||||||||||| |||||||  || ||||||||||||||||||||| ||||||    
T  9923418 tttcccaccatggaaaagtttttttca-accattagattaaagaggagtattaatttta 9923475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 12330710 - 12330664
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  12330710 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 12330664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 31078456 - 31078502
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  31078456 ggtgaagtttagcatgggaaagactaattttttccaccatgggaaag 31078502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 29759596 - 29759643
Alignment:
Q  115 gggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    ||||||||||||||||||||||||||| ||||| |||| |||| ||||    
T  29759596 gggtgaagtttagcatgggaaagactaattttttccactatgggaaag 29759643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 461986 - 461950
Alignment:
Q  121 agtttagcatgggaaagactagtttttcccaccatgg 157  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  461986 agtttagcatgggaaaggctagttttttccaccatgg 461950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 36912252 - 36912292
Alignment:
Q  122 gtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||| ||| ||||||||||||||| ||||    
T  36912252 gtttagcatgggaaaggctattttttcccaccatgggaaag 36912292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 30846013 - 30846055
Alignment:
Q  113 tagggtgaagtttagcatgggaaagactagtttttcccaccat 155  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  30846013 tagggtgaagtttagcatgggaaagactaatttttcccaccat 30846055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 33608400 - 33608466
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaagcttttttctgacaattagat 182  Q
    |||| ||||||||||||||||  |||||||||||||| || | |||||||||||||||| |||||||    
T  33608400 ggtggagtttagcatgggaaatgctagtttttcccactataggaaagcttttttctgaccattagat 33608466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 7054120 - 7054183
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatgg 209  Q
    |||||||||||||||||| |||||||  || |||||||||| |||||||||| |||||| |||||    
T  7054120 tttcccaccatggaaaagtttttttc-aaccattagattaaggaggagtattaattttatcatgg 7054183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 30846544 - 30846503
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatgg 157  Q
    |||||||||||||||||||||| ||| ||||| |||||||||    
T  30846544 ggtgaagtttagcatgggaaaggctaattttttccaccatgg 30846503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 42345424 - 42345487
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatgg 209  Q
    ||||||||||||| |||| |||||||  || |||||||||| |||||||||| |||||| |||||    
T  42345424 tttcccaccatgggaaagtttttttc-aaccattagattaaggaggagtattaattttatcatgg 42345487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 42346123 - 42346060
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatgg 209  Q
    ||||||| ||||| |||| |||||||  || ||||||||||||||||||||| |||||| |||||    
T  42346123 tttcccatcatgggaaagtttttttca-accattagattaaagaggagtattaattttatcatgg 42346060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 7635683 - 7635637
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  7635683 ggtgaagtttagcatgggaaagactaatttttcccaccatgggaaag 7635637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 7635124 - 7635170
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  7635124 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 7635170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 18290543 - 18290497
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  18290543 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 18290497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 18290215 - 18290261
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||  ||| ||||||||||||||| ||||    
T  18290215 ggtgaagtttagcatgggaaaagctaatttttcccaccatgggaaag 18290261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 12999526 - 12999485
Alignment:
Q  115 gggtgaagtttagcatgggaaagactagtttttcccaccatg 156  Q
    |||||||||||| |||||||||| ||| ||||||||||||||    
T  12999526 gggtgaagtttaacatgggaaaggctaatttttcccaccatg 12999485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 14735357 - 14735402
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaa 161  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||    
T  14735357 ggtggagtttagcatgggaaagactattttttcccaccatggaaaa 14735402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 25137973 - 25137932
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatgg 157  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  25137973 ggtgaagtttagcatgggaaagactaatttttcccaccatgg 25137932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 29007219 - 29007124
Alignment:
Q  143 tttttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatggtctgtctgcagtatattattttctctttc 238  Q
    ||||||||||||||| |||| |  ||| | || ||||||||||||||||||| | |||||| |||||||| ||  || |||||| |||||||||||    
T  29007219 tttttcccaccatgggaaagttagtttttaaccattagattaaagaggagtactaattttatcatggtctatccacactatatttttttctctttc 29007124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 25137412 - 25137458
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  25137412 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 25137458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 23632953 - 23633019
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatggtctg 213  Q
    |||||||||||||||||| ||||||   || |||||||||||||||||||| |||||||  ||||||||    
T  23632953 tttcccaccatggaaaagtttttttt--accattagattaaagaggagtatagattttatgatggtctg 23633019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 39045285 - 39045240
Alignment:
Q  117 gtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||    
T  39045285 gtgatgtttagcatgggaaaggctactttttcccaccatggaaaag 39045240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 33686925 - 33686972
Alignment:
Q  115 gggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||||  || ||||||||||||||| ||||    
T  33686925 gggtgaagtttagcatgggaaaggttaatttttcccaccatgggaaag 33686972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 30414181 - 30414227
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||| ||||||||| ||| ||||||||||||||| ||||    
T  30414181 ggtgaagtttagtatgggaaaggctaatttttcccaccatgggaaag 30414227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 30916514 - 30916451
Alignment:
Q  145 tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatgg 209  Q
    ||||||| ||||||||||  |||||| | || |||||||||||||||||||| |||||| |||||    
T  30916514 tttcccatcatggaaaagtctttttcagcca-ttagattaaagaggagtattaattttatcatgg 30916451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 33687797 - 33687757
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatg 156  Q
    |||||||||||||||||||||| ||| ||||| ||||||||    
T  33687797 ggtgaagtttagcatgggaaaggctaattttttccaccatg 33687757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 6609552 - 6609597
Alignment:
Q  117 gtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  6609552 gtgaagtttagcatgggaaaggctaatttttcccaccatggaaaag 6609597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 6610092 - 6610021
Alignment:
Q  115 gggtgaagtttagcatgggaaagactagtttttcccaccatggaaaagcttttttctgacaattagattaaa 186  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| |||| |  ||| | || |||||||||||    
T  6610092 gggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccattagattaaa 6610021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 15561541 - 15561580
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccat 155  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  15561541 ggtgaagtttagcatgggaaagactaatttttcccaccat 15561580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 15562088 - 15562018
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaagcttttttctgacaattagattaaa 186  Q
    |||||||||||||||||||||| ||| ||||||||||||||| |||| |  ||| | || |||||||||||    
T  15562088 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaagttagtttttaaccattagattaaa 15562018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 16903945 - 16903899
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  16903945 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 16903899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 30899390 - 30899436
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  30899390 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 30899436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 30899949 - 30899903
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| |||||||||||||| |||||    
T  30899949 ggtgaagtttagcatgggaaaggctaatttttcccaccatgaaaaag 30899903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 7994626 - 7994575
Alignment:
Q  111 tttagggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||| |||||||||||||||||||||| ||| ||||| ||||||||| ||||    
T  7994626 tttatggtgaagtttagcatgggaaaggctaattttttccaccatgggaaag 7994575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 37996631 - 37996585
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||| ||||| ||||    
T  37996631 ggtgaagtttagcatgggaaaggctaatttttcccatcatgggaaag 37996585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 44094858 - 44094765
Alignment:
Q  123 tttagcatgggaaagactagtt-tttcccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatggtctgtct 216  Q
    |||||||||||||||   |||| |||||||||||  ||||| |||||| |||| |||| |||||||||||| | |||||||| ||| ||||||||    
T  44094858 tttagcatgggaaaggaaagttgtttcccaccataaaaaagttttttt-tgaccattaaattaaagaggagcactgattttatcattgtctgtct 44094765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 8905412 - 8905524
Alignment:
Q  123 tttagcatgggaaagactagtt-tttcccaccatggaaaagcttttttctg--acaattagattaaagaggagtattgattttaccatggtctgtctgca 219  Q
    ||||||||||||| |||||||| |||||||||||| ||||| |||||| |   || ||| ||||  ||||||||||| |||||| |||||  ||||||||    
T  8905412 tttagcatgggaatgactagttgtttcccaccatgaaaaagtttttttttccaaccattggattgtagaggagtattaattttatcatggattgtctgca 8905511  T
Q  220 gtatattattttc 232  Q
     || ||| |||||    
T  8905512 ctacatttttttc 8905524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 20992033 - 20991974
Alignment:
Q  149 ccaccatggaaaagcttttttctgacaattagattaaagaggagtattgattttaccatgg 209  Q
    ||||||||| |||| |||||||  || ||||||||||||||||||||| |||||| |||||    
T  20992033 ccaccatgggaaagtttttttca-accattagattaaagaggagtattaattttatcatgg 20991974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 4133 - 4179
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  4133 ggtgaagtttagcatgggaaaggctaatttttcccaccatgggaaag 4179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 4672 - 4626
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||||||| ||||| ||| ||||| ||||    
T  4672 ggtgaagtttagcatgggaaagactaattttttccatcatgggaaag 4626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 61574 - 61620
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||||||||||||| ||| ||||||||| ||||| ||||    
T  61574 ggtgaagtttagcatgggaaaggctaatttttcccatcatgggaaag 61620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 202331 - 202285
Alignment:
Q  116 ggtgaagtttagcatgggaaagactagtttttcccaccatggaaaag 162  Q
    |||||||||||| || |||||| ||| ||||||||||||||||||||    
T  202331 ggtgaagtttagtataggaaaggctaatttttcccaccatggaaaag 202285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University