View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_133 (Length: 250)
Name: NF1297_low_133
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_133 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 29 - 250
Target Start/End: Original strand, 13348001 - 13348221
Alignment:
| Q |
29 |
aactttttaagtaacatctaatggaatcactctatttctctacgttatacaaattttttgaaatgcaattacaaaagtgaaatgatatcgcaaaatattg |
128 |
Q |
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| T |
13348001 |
aactttttaagtaacatctaatggaattactctatttctctatgttatacaaattttttgaaatgcaattacaaaagtgaaaagatatagcaaaatattg |
13348100 |
T |
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| Q |
129 |
aactttaatcggattttcattgagcaaacaaacagattacagaaaaggaaaaacgatagaacaataaaagaacacctgaaatttagtattagaggggcga |
228 |
Q |
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| T |
13348101 |
aactttaatcggattttcattgagcaggtaaacagattacagaaaaggaaaaacga-agaacaataaaagaacacctgaaatttagtattagaggggcga |
13348199 |
T |
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| Q |
229 |
tcaccaatcctccaaaaatatc |
250 |
Q |
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| T |
13348200 |
tcaccaatcctccaaaaatatc |
13348221 |
T |
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