View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_low_14 (Length: 535)

Name: NF1297_low_14
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_low_14
NF1297_low_14
[»] chr4 (8 HSPs)
chr4 (23-468)||(54146443-54146891)
chr4 (121-299)||(54148275-54148454)
chr4 (159-299)||(16871651-16871794)
chr4 (145-263)||(37945520-37945641)
chr4 (156-301)||(16543358-16543505)
chr4 (73-250)||(24131825-24131996)
chr4 (48-292)||(16869513-16869767)
chr4 (188-299)||(14458539-14458651)
[»] chr3 (11 HSPs)
chr3 (187-301)||(18088132-18088246)
chr3 (189-298)||(16462968-16463077)
chr3 (194-299)||(46691454-46691559)
chr3 (183-299)||(814379-814498)
chr3 (183-299)||(42531289-42531406)
chr3 (194-299)||(50294658-50294762)
chr3 (230-299)||(814260-814329)
chr3 (48-130)||(50294821-50294903)
chr3 (195-299)||(50297460-50297565)
chr3 (183-299)||(42530590-42530705)
chr3 (186-293)||(30057091-30057199)
[»] chr1 (11 HSPs)
chr1 (159-299)||(28664975-28665122)
chr1 (187-299)||(15629345-15629458)
chr1 (174-304)||(6696010-6696141)
chr1 (187-299)||(15630144-15630257)
chr1 (200-299)||(2073376-2073479)
chr1 (200-299)||(2076908-2077011)
chr1 (230-299)||(2071571-2071641)
chr1 (230-299)||(2075101-2075171)
chr1 (158-299)||(9168411-9168545)
chr1 (188-299)||(10354364-10354477)
chr1 (254-299)||(370037-370082)
[»] chr6 (12 HSPs)
chr6 (173-299)||(10741772-10741898)
chr6 (173-300)||(10740573-10740698)
chr6 (183-299)||(21862689-21862806)
chr6 (156-270)||(22868490-22868606)
chr6 (153-298)||(33423940-33424087)
chr6 (156-299)||(18792809-18792954)
chr6 (152-264)||(9290615-9290730)
chr6 (200-299)||(18984497-18984597)
chr6 (180-300)||(13166434-13166554)
chr6 (252-299)||(21858039-21858086)
chr6 (35-130)||(28064509-28064603)
chr6 (245-293)||(236584-236632)
[»] chr7 (17 HSPs)
chr7 (183-299)||(15614244-15614361)
chr7 (174-299)||(46963049-46963175)
chr7 (183-299)||(2628237-2628354)
chr7 (189-298)||(21814428-21814537)
chr7 (174-300)||(46964403-46964530)
chr7 (228-299)||(21811668-21811739)
chr7 (154-277)||(6840570-6840695)
chr7 (234-299)||(6841482-6841547)
chr7 (180-226)||(5763705-5763751)
chr7 (230-299)||(48643621-48643690)
chr7 (231-299)||(5763596-5763666)
chr7 (254-300)||(33651300-33651346)
chr7 (200-261)||(44337385-44337447)
chr7 (231-295)||(3902389-3902454)
chr7 (245-297)||(17921256-17921308)
chr7 (174-253)||(26403493-26403573)
chr7 (200-299)||(44339050-44339150)
[»] chr2 (8 HSPs)
chr2 (174-299)||(8986927-8987053)
chr2 (197-299)||(1172773-1172875)
chr2 (174-299)||(8985574-8985700)
chr2 (183-299)||(32291155-32291272)
chr2 (235-299)||(29409118-29409182)
chr2 (230-301)||(32276938-32277008)
chr2 (200-299)||(38583502-38583602)
chr2 (48-81)||(1175437-1175470)
[»] scaffold0325 (1 HSPs)
scaffold0325 (188-299)||(14525-14638)
[»] scaffold0002 (1 HSPs)
scaffold0002 (188-299)||(406244-406356)
[»] scaffold0511 (1 HSPs)
scaffold0511 (156-299)||(11187-11332)
[»] chr5 (5 HSPs)
chr5 (183-297)||(24137600-24137715)
chr5 (200-299)||(11320486-11320585)
chr5 (159-297)||(11343894-11344032)
chr5 (189-258)||(9512489-9512559)
chr5 (253-298)||(6643359-6643404)
[»] chr8 (7 HSPs)
chr8 (188-299)||(43414101-43414211)
chr8 (234-299)||(43615458-43615523)
chr8 (200-261)||(20241063-20241125)
chr8 (200-261)||(20251942-20252004)
chr8 (241-301)||(14699765-14699825)
chr8 (200-299)||(20242727-20242827)
chr8 (200-299)||(20250333-20250433)
[»] scaffold0007 (1 HSPs)
scaffold0007 (241-299)||(14306-14364)


Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 23 - 468
Target Start/End: Complemental strand, 54146891 - 54146443
Alignment:
Q  23 atcatcaacaagcaaatcaaacatatcccaaacttttgggattcgacagcggaagcgacaagcgattcaaggtggatcaaaacaagttctagatatcatg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  54146891 atcatcaacaagcaaatcaaacatatcccaaacttttgggattcgacagcggaagcgacaagcggttcaaggcggatcaaaacaagttctagatatcatg 54146792  T
Q  123 ttaacaatgcatacaagatagggaaagatagataacaacaaagacggctag-tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaa 221  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54146791 ttaacaatacatacaaaatagggaaagatagataacaacaaagacggctaggtttcattaaaatatcaatagcttaatattacaaaatgttatgagagaa 54146692  T
Q  222 tatatgataaacctaatggactctaacttactaatataaaggc--ctaatagcttaagcccaatactttattatctaacagtcacagtgtattatgctag 319  Q
    ||||||||||| |||||||||||||||||||||||||||||||  ||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||    
T  54146691 tatatgataaatctaatggactctaacttactaatataaaggcgcctaatagtttaagcttaatactttattatctaacagtcacaatgtattatgctag 54146592  T
Q  320 caaaatgttggtttgtggcctgctatacaaagtcaattaattcatcgcatggttgtagcaggaaatgtctctgccattatgcaggttttgctacccgagc 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  54146591 caaaatgttggtttgtggcctgctatacaaagtcaattaattcatcgtatggttgtagcaggaaatgtctctgccattatgcaggttttactacccaagc 54146492  T
Q  420 agcaggccaaactgtcatgatatggaggaatgcacaacaccgtggaacc 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54146491 agcaggccaaactgtcatgatatggaggaatgcacaacaccgtggaacc 54146443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 121 - 299
Target Start/End: Complemental strand, 54148454 - 54148275
Alignment:
Q  121 tgttaacaatgcatacaagatagggaaagatagataacaacaaagacggctag--tttcattaaaatatcaatagcttaatattacaaaatgttatgaga 218  Q
    |||||||||| ||||||| |||| ||||||||||||||||| |||||||| ||  |||| |||||||||||||||||||||| |||||| ||||||||||    
T  54148454 tgttaacaatacatacaaaatagagaaagatagataacaacgaagacggccaggatttcgttaaaatatcaatagcttaataatacaaa-tgttatgaga 54148356  T
Q  219 gaatatatgataaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    |||||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||    
T  54148355 gaatatataataaatctattggactctaacttactaatataaaagcctaatagcttaagctcaatgctttgttatctaaca 54148275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 159 - 299
Target Start/End: Complemental strand, 16871794 - 16871651
Alignment:
Q  159 aacaaagacggctag--tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaac-ctaatggactctaacttactaa 255  Q
    ||||| |||||||||  |||||||| | || ||||||||||| ||||||||| ||||| ||| ||||||| |||||  ||||||||||||||||||||||    
T  16871794 aacaacgacggctagggtttcattagactaacaatagcttaacattacaaaaggttataagataatatataataaaatctaatggactctaacttactaa 16871695  T
Q  256 tataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    |||||| ||| |||| |||||||| |||||||||||||||||||    
T  16871694 tataaatgcccaataacttaagcctaatactttattatctaaca 16871651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 263
Target Start/End: Complemental strand, 37945641 - 37945520
Alignment:
Q  145 gaaagatagataacaacaaagacggctag--tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgat-aaacctaatgga 241  Q
    |||||| ||||||||| || ||| |||||  |||||||||||||||||| | |||| ||||||||| ||||| ||||||||||| || |||  |||||||    
T  37945641 gaaagagagataacaagaacgacagctagagtttcattaaaatatcaattgattaacattacaaaaggttataagagaatatataataaaatttaatgga 37945542  T
Q  242 ctctaacttactaatataaagg 263  Q
    ||||||||||||||||||||||    
T  37945541 ctctaacttactaatataaagg 37945520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 156 - 301
Target Start/End: Complemental strand, 16543505 - 16543358
Alignment:
Q  156 aacaacaaagacggctag--tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaacct-aatggactctaacttac 252  Q
    ||||||||||||||||||  |||||| | |||||||||| ||||| ||| ||||| ||||   |||||||||| ||||| || |||| ||||||||||||    
T  16543505 aacaacaaagacggctagggtttcat-agaatatcaataccttaacattgcaaaaggttacatgagaatatataataaaacttaatgaactctaacttac 16543407  T
Q  253 taatataaaggcctaatagcttaagcccaatactttattatctaacagt 301  Q
    ||||||||| | | |||| |||||| ||| |||||||||||||||||||    
T  16543406 taatataaaaggccaataacttaagtccattactttattatctaacagt 16543358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 250
Target Start/End: Complemental strand, 24131996 - 24131825
Alignment:
Q  73 ggaagcgacaagcgattcaaggtggatcaaaacaagttctagatatcatgttaacaatgcatacaagatagggaaagatagataacaacaaagacggcta 172  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||| ||||||||||    ||||||| ||    || | ||| || |||||||||| |||    
T  24131996 ggaagcgacaaacgattcaaggtggatcaaaacaagctcttgataccatgttaaca----atacaag-ta---caaaagagagaataacaaagacgacta 24131905  T
Q  173 --gtttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgat-aaacctaatggactctaactt 250  Q
      ||||||||||||||| |||   |||| ||||||||||||||| |||||| |||| || |||||||||||||||||||||    
T  24131904 gggtttcattaaaatat-aatgatttaacattacaaaatgttataagagaacatataataaaacctaatggactctaactt 24131825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 48 - 292
Target Start/End: Complemental strand, 16869767 - 16869513
Alignment:
Q  48 tcccaaacttttgggattcgacagcggaagcgacaagcgattcaaggtggatcaaaacaagttctagatatcatgttaacaatgca--tacaagataggg 145  Q
    |||||||||||||| | || |||||||||||||| |   | |||||| || ||||| || | ||| |||| |||||||||||| ||  || || || | |    
T  16869767 tcccaaacttttggaactcaacagcggaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatataacatggag 16869668  T
Q  146 aaagataga-taacaacaaagacggctag--tttcattaaaatatcaatagcttaatattacaa----aatgttatgagagaatatatgataaac-ctaa 237  Q
    ||||| ||| ||  ||||| ||||||||   |||||||| |||| |||||||||||  ||||||    || ||||| ||||| ||||| |||||  ||||    
T  16869667 aaagagagaataggaacaacgacggctacgatttcattataataacaatagcttaacgttacaacaaaaaagttataagagagtatataataaaatctaa 16869568  T
Q  238 tggactctaacttactaatataaaggcctaatagcttaagcccaatactttatta 292  Q
    || ||||||||||||||||||||| ||| |||| ||||||| |||||||||||||    
T  16869567 tgaactctaacttactaatataaaagcccaataacttaagctcaatactttatta 16869513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 14458651 - 14458539
Alignment:
Q  188 caatagcttaatattacaaaatgttatgagagaatatatgataaacctaatggact-ctaacttactaatataaaggcctaatagcttaagcccaatact 286  Q
    ||||| |||||||| |||||| ||||  ||||||| |||   ||||||||| |||| |||||||| |||||||||| |  ||||||||||||||||| |     
T  14458651 caataacttaatatcacaaaaggttacaagagaatgtatataaaacctaatagactactaacttagtaatataaagacacaatagcttaagcccaattcc 14458552  T
Q  287 ttattatctaaca 299  Q
    |||| ||||||||    
T  14458551 ttatgatctaaca 14458539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 187 - 301
Target Start/End: Original strand, 18088132 - 18088246
Alignment:
Q  187 tcaatagcttaatattacaaaatgttatgagagaatatatgataaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatact 286  Q
    ||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18088132 tcaatagcttgctattacaaaatgttatgagagaatatataataaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatact 18088231  T
Q  287 ttattatctaacagt 301  Q
    |||||||| ||||||    
T  18088232 ttattatccaacagt 18088246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 16463077 - 16462968
Alignment:
Q  189 aatagcttaatattacaaaatgttatgagagaatatatgataaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatacttt 288  Q
    ||||| |||| |||||||||   ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  16463077 aatagattaacattacaaaagaatattagagaatatataataaacctaatggactctaacttactaatataaaggcttaatatcttaagctcaatacttt 16462978  T
Q  289 attatctaac 298  Q
    ||||||||||    
T  16462977 attatctaac 16462968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 46691454 - 46691559
Alignment:
Q  194 cttaatattacaaaatgttatgagagaatatatgataaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattat 293  Q
    ||||| ||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||| | |||| ||||||  ||||||||||||||    
T  46691454 cttaacattacaaaaggttataagagaatatataataaaactaatggactctaacttactagtataaaggtccaataacttaagttcaatactttattat 46691553  T
Q  294 ctaaca 299  Q
    ||||||    
T  46691554 ctaaca 46691559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 814379 - 814498
Alignment:
Q  183 aatatcaatagcttaatattacaaaatgttatgagagaatatatgataa----acctaatggactctaacttactaatataaaggcctaatagcttaagc 278  Q
    |||| ||||||||||| ||||||| | ||||| ||||||||||| ||||    |||||||||||||||||||||||||||||| ||| |||| ||||||     
T  814379 aataccaatagcttaacattacaagaggttataagagaatatat-ataacgaaacctaatggactctaacttactaatataaatgcccaataacttaagt 814477  T
Q  279 ccaatactttattatctaaca 299  Q
    |||||||||||||||||||||    
T  814478 ccaatactttattatctaaca 814498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 42531406 - 42531289
Alignment:
Q  183 aatatcaatagcttaatattacaaaatgttatgagagaatatatgataaa-cctaatggactctaacttactaatataaaggcctaatagcttaagccca 281  Q
    ||||||||| |||||| ||||||||| ||||| ||||||||||| ||||| ||||||| ||| ||||||||||||||||| | | |||| || |||||||    
T  42531406 aatatcaatggcttaacattacaaaaggttataagagaatatataataaaacctaatgaactttaacttactaatataaaagtccaataactcaagccca 42531307  T
Q  282 atactttattatctaaca 299  Q
    || |||||||||||||||    
T  42531306 atcctttattatctaaca 42531289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 50294762 - 50294658
Alignment:
Q  194 cttaatattacaaaatgttatgagagaatatatgataaa-cctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttatta 292  Q
    ||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||| ||||||||||| | |||| |||||| |||||||||||| |    
T  50294762 cttaatattacaaaatgttataagataatatataataaaacctaatggactctaacttattaatataaaggtc-aataacttaag-ccaatactttatca 50294665  T
Q  293 tctaaca 299  Q
    |||||||    
T  50294664 tctaaca 50294658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 814329 - 814260
Alignment:
Q  230 aaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||||||||||||||    
T  814329 aaacctaatggactctaacttactaatataaatgcccaataacttaagtccaatactttattatctaaca 814260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 50294903 - 50294821
Alignment:
Q  48 tcccaaacttttgggattcgacagcggaagcgacaagcgattcaaggtggatcaaaacaagttctagatatcatgttaacaat 130  Q
    ||||||||||||| |||||||||||||||||||||||   || |||||||||| ||||||| | |||||||||||||||||||    
T  50294903 tcccaaacttttgagattcgacagcggaagcgacaagtagtttaaggtggatcgaaacaagctttagatatcatgttaacaat 50294821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 195 - 299
Target Start/End: Complemental strand, 50297565 - 50297460
Alignment:
Q  195 ttaatattacaaaatgttatgagagaatatatgataaacc-taatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattat 293  Q
    |||| ||||||||| ||||| || ||| |||| ||||| | ||||| |||||||||||||||||||||| |  |||| ||||||| ||||||||||||||    
T  50297565 ttaacattacaaaaggttataagtgaacatataataaaacataatgaactctaacttactaatataaagactcaataacttaagcacaatactttattat 50297466  T
Q  294 ctaaca 299  Q
    ||||||    
T  50297465 ctaaca 50297460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 42530705 - 42530590
Alignment:
Q  183 aatatcaatagcttaatattacaaaatgttatgagagaatatatgataaa-cctaatggactctaacttactaatataaaggcctaatagcttaagccca 281  Q
    ||||||||| |||||| ||||||||  ||||| ||||||||||| ||||| ||||||| ||| ||| ||||||||||||| | | | || || ||| |||    
T  42530705 aatatcaatggcttaacattacaaag-gttataagagaatatataataaaacctaatgaactttaatttactaatataaaagtc-actaactcaagtcca 42530608  T
Q  282 atactttattatctaaca 299  Q
    ||||||||||||||||||    
T  42530607 atactttattatctaaca 42530590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 293
Target Start/End: Complemental strand, 30057199 - 30057091
Alignment:
Q  186 atcaatagcttaatattacaaaatgttatgagagaatatatga-taaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaata 284  Q
    ||||||||||||| |||||||||  |||| ||||||||||| |  ||| ||||||||||||||||||  |||||||| ||| |||| ||| ||   ||||    
T  30057199 atcaatagcttaacattacaaaagattataagagaatatataacaaaatctaatggactctaacttatgaatataaatgcccaataacttgagtttaata 30057100  T
Q  285 ctttattat 293  Q
    |||||||||    
T  30057099 ctttattat 30057091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 159 - 299
Target Start/End: Complemental strand, 28665122 - 28664975
Alignment:
Q  159 aacaaagacggctag--tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaacctaatggactctaacttactaat 256  Q
    ||||| |||||||||  |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28665122 aacaacgacggctagggtttcattagaataacaatagcttaatattacaaaatgttatgagagaatatataataaacctaatggactctaacttactaat 28665023  T
Q  257 ataaagg-----cctaatagcttaagcccaatactttattatctaaca 299  Q
    |||||||      ||||||| |||||| ||||||||||||||||||||    
T  28665022 ataaaggtctaatctaatagtttaagctcaatactttattatctaaca 28664975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 15629345 - 15629458
Alignment:
Q  187 tcaatagcttaatattacaaaatgttatgagagaatatatgataaac-ctaatggactctaacttactaatataaaggcctaatagcttaagcccaatac 285  Q
    |||||||||||||||||||||| ||||| ||||||||||| |||||  |||||| ||||||||||||||||||||||| | |||| |||||||||||||     
T  15629345 tcaatagcttaatattacaaaaggttataagagaatatataataaaatctaatgaactctaacttactaatataaaggtccaataacttaagcccaatat 15629444  T
Q  286 tttattatctaaca 299  Q
    ||||||||||||||    
T  15629445 tttattatctaaca 15629458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 174 - 304
Target Start/End: Complemental strand, 6696141 - 6696010
Alignment:
Q  174 tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaac-ctaatggactctaacttactaatataaaggcctaatagc 272  Q
    |||||||| | || ||||||||||| ||||||||| ||||| ||||||||| | |||||  |||||||||||||||||||||||||||| ||| |||| |    
T  6696141 tttcattagactaacaatagcttaacattacaaaaggttataagagaatatttaataaaatctaatggactctaacttactaatataaatgcccaataac 6696042  T
Q  273 ttaagcccaatactttattatctaacagtcac 304  Q
    ||||||| ||||||||||||||||||| ||||    
T  6696041 ttaagcctaatactttattatctaacaatcac 6696010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 15630144 - 15630257
Alignment:
Q  187 tcaatagcttaatattacaaaatgttatgagagaatatatgataaa-cctaatggactctaacttactaatataaaggcctaatagcttaagcccaatac 285  Q
    |||||| ||||||||| ||||| ||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||||  |||||| ||||||    
T  15630144 tcaataacttaatattccaaaaggttataagagaatatataataaaacctaatagactctaacttactaatataaaggcccaataatttaagctcaatac 15630243  T
Q  286 tttattatctaaca 299  Q
    |||||||| |||||    
T  15630244 tttattatttaaca 15630257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 2073376 - 2073479
Alignment:
Q  200 attacaaaatgttatgagagaatatatgata----aacctaatggact-ctaacttactaatataaaggcctaatagcttaagcccaatactttattatc 294  Q
    ||||||||| ||||| ||||||||||| |||    ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  2073376 attacaaaaagttataagagaatatat-atactaaaacctaatggactgctaacttactaatattaaggactaatagcttaagcccaatattttattatc 2073474  T
Q  295 taaca 299  Q
    |||||    
T  2073475 taaca 2073479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 2076908 - 2077011
Alignment:
Q  200 attacaaaatgttatgagagaatatatgata----aacctaatggact-ctaacttactaatataaaggcctaatagcttaagcccaatactttattatc 294  Q
    ||||||||| ||||| ||||||||||| |||    ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  2076908 attacaaaaagttataagagaatatat-atactaaaacctaatggactgctaacttactaatattaaggactaatagcttaagcccaatattttattatc 2077006  T
Q  295 taaca 299  Q
    |||||    
T  2077007 taaca 2077011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 2071571 - 2071641
Alignment:
Q  230 aaacctaatggact-ctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    |||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  2071571 aaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaaca 2071641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 2075101 - 2075171
Alignment:
Q  230 aaacctaatggact-ctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    |||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  2075101 aaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaaca 2075171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 299
Target Start/End: Original strand, 9168411 - 9168545
Alignment:
Q  158 caacaaagacggctag--tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaacctaatggactctaacttactaa 255  Q
    ||||||||||||||||  |||||| |||||||||||| ||| |||| |||||||||||| ||||||||||| |||||        ||| ||||||||| |    
T  9168411 caacaaagacggctagggtttcat-aaaatatcaataacttgatatcacaaaatgttataagagaatatataataaa--------actgtaacttactga 9168501  T
Q  256 tataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    ||||||||   |||||||||||  ||||||||||||||||||||    
T  9168502 tataaaggttcaatagcttaagtgcaatactttattatctaaca 9168545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 10354477 - 10354364
Alignment:
Q  188 caatagcttaatattacaaaatgttatgagagaatatatgataaacctaatggact-ctaacttactaat-ataaaggcctaatagcttaagcccaatac 285  Q
    ||||||| ||||||| |||||  |||| |||||||||||   ||| ||||| |||| |||||||| |||| ||||||||||||||||||||| | ||||     
T  10354477 caatagcgtaatattgcaaaagtttataagagaatatatataaaatctaatagactactaacttagtaatgataaaggcctaatagcttaagtctaatat 10354378  T
Q  286 tttattatctaaca 299  Q
    ||||| ||||||||    
T  10354377 tttatcatctaaca 10354364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 370082 - 370037
Alignment:
Q  254 aatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    |||||||||| | ||||||||||||| ||||||||||||| |||||    
T  370082 aatataaaggtccaatagcttaagcctaatactttattatttaaca 370037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 173 - 299
Target Start/End: Complemental strand, 10741898 - 10741772
Alignment:
Q  173 gtttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaacctaatggactctaacttactaatataaaggcctaatagc 272  Q
    |||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| || |||| |    
T  10741898 gtttcaatagaatatcaattgcttaatattacaaaatgttatgagagaatatataataaatctaatggactctaactttctaatataaagacccaataac 10741799  T
Q  273 ttaagcccaatactttattatctaaca 299  Q
    |||||||||||| ||||||||||||||    
T  10741798 ttaagcccaatattttattatctaaca 10741772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 173 - 300
Target Start/End: Complemental strand, 10740698 - 10740573
Alignment:
Q  173 gtttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaacctaatggactctaacttactaatataaaggcctaatagc 272  Q
    |||||| || |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||| |  |||| |    
T  10740698 gtttcaatagaatatcaataacttaatattacaaaatgttatgagagaatatataataaacgtaatggactctaatttgctaatataaagac--aataac 10740601  T
Q  273 ttaagcccaatactttattatctaacag 300  Q
    |||||||||||| |||||||||||||||    
T  10740600 ttaagcccaatattttattatctaacag 10740573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 21862806 - 21862689
Alignment:
Q  183 aatatcaatagcttaatattacaaaatgttatgagagaatatatgataaa-cctaatggactctaacttactaatataaaggcctaatagcttaagccca 281  Q
    |||| |||| |||||||||||||||  ||||  ||||||||||| ||||| ||||||| |||||||||| ||||||||||| || |||||||||||| ||    
T  21862806 aataacaattgcttaatattacaaagagttactagagaatatataataaaacctaatgcactctaacttgctaatataaagacccaatagcttaagctca 21862707  T
Q  282 atactttattatctaaca 299  Q
    ||||||||||||||||||    
T  21862706 atactttattatctaaca 21862689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 22868606 - 22868490
Alignment:
Q  156 aacaacaaagacggctag--tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaa-cctaatggactctaacttac 252  Q
    ||||||||||| ||||||  |||||| | |||||||||||| ||| ||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||    
T  22868606 aacaacaaagatggctagggtttcat-agaatatcaatagcataacattacaaaaagttataagagaatatataataaaacctaatggactctaacttac 22868508  T
Q  253 taatataaaggcctaata 270  Q
    ||||||||| ||| ||||    
T  22868507 taatataaaagcccaata 22868490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 153 - 298
Target Start/End: Original strand, 33423940 - 33424087
Alignment:
Q  153 gataacaacaaagacggctag--tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaa-cctaatggactctaact 249  Q
    |||||||| ||||||||||||  |||| | | |||| |||||||| || ||||||||  |||||| |||||||||| ||||| ||||||| ||| |||||    
T  33423940 gataacaataaagacggctagggtttcgt-agaataacaatagctcaacattacaaagggttatgggagaatatataataaaacctaatgaactttaact 33424038  T
Q  250 tactaatataaaggcctaatagcttaagcccaatactttattatctaac 298  Q
    ||||||||||||| |  |||| ||||||| |||||||||||||||||||    
T  33424039 tactaatataaagacgcaataacttaagctcaatactttattatctaac 33424087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 299
Target Start/End: Original strand, 18792809 - 18792954
Alignment:
Q  156 aacaacaaagacggctag--tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgat-aaacctaatggactctaacttac 252  Q
    ||||||||| ||||||||  |||||| ||||||||||||| |||| ||||||||| ||||| ||||||||||  || |||| ||||| ||| ||||||||    
T  18792809 aacaacaaatacggctagagtttcat-aaaatatcaatagtttaacattacaaaaggttataagagaatatacaataaaacttaatgcactttaacttac 18792907  T
Q  253 taatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    |||||||  |||  |||| || |||||||||| ||||||||||||||    
T  18792908 taatatattggctcaataactgaagcccaatagtttattatctaaca 18792954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 9290615 - 9290730
Alignment:
Q  152 agataacaacaaagacggctag--tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaa-cctaatggactctaac 248  Q
    ||||||||| || |||||||||  |||||||| |||| |||| |  ||| ||||||||| ||||| ||||||||||| ||||| ||||||||||||||||    
T  9290615 agataacaagaatgacggctagggtttcattagaataacaattgtctaacattacaaaaggttataagagaatatataataaaacctaatggactctaac 9290714  T
Q  249 ttactaatataaaggc 264  Q
    ||| ||||||||||||    
T  9290715 ttattaatataaaggc 9290730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 299
Target Start/End: Complemental strand, 18984597 - 18984497
Alignment:
Q  200 attacaaaatgttatgagagaatatatgataaacc-taatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaac 298  Q
    ||||| ||| ||||| ||||||||||| ||||| | ||||| ||||||||||||||||||||||||| ||||   ||||||||||| |||||||| ||||    
T  18984597 attactaaaggttataagagaatatataataaaacataatgtactctaacttactaatataaaggcccaataatctaagcccaatattttattatttaac 18984498  T
Q  299 a 299  Q
    |    
T  18984497 a 18984497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 300
Target Start/End: Complemental strand, 13166554 - 13166434
Alignment:
Q  180 taaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataa-acctaatggactctaacttactaatataaaggcctaatagcttaagc 278  Q
    |||||||||||| |||||| |||| |||| ||||||||||||||||| |||| || ||||| ||||||||||  |||||||| | ||    | |||||||    
T  13166554 taaaatatcaatggcttaacatta-aaaaggttatgagagaatatataataacacttaatgaactctaacttgttaatataaggacccgccaacttaagc 13166456  T
Q  279 ccaatactttattatctaacag 300  Q
    |||| |||||||||||||||||    
T  13166455 ccaaaactttattatctaacag 13166434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 21858086 - 21858039
Alignment:
Q  252 ctaatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    ||||||||||| || |||||||||||| ||||||||||||||||||||    
T  21858086 ctaatataaagacccaatagcttaagctcaatactttattatctaaca 21858039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 28064509 - 28064603
Alignment:
Q  35 caaatcaaacatatcccaaacttttgggat-tcgacagcggaagcgacaagcgattcaaggtggatcaaaacaagttctagatatcatgttaacaat 130  Q
    |||| |||||| |||||| ||||||||||  || | ||||||||| ||||||  || |||||||||||||||||| |||  ||| ||||||||||||    
T  28064509 caaaccaaacacatcccatacttttgggaactcaatagcggaagcaacaagcagtttaaggtggatcaaaacaagctct--ataccatgttaacaat 28064603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 236632 - 236584
Alignment:
Q  245 taacttactaatataaaggcctaatagcttaagcccaatactttattat 293  Q
    ||||||| |||||||||| || |||| ||||||| ||||||||||||||    
T  236632 taacttagtaatataaagacccaataacttaagctcaatactttattat 236584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 15614244 - 15614361
Alignment:
Q  183 aatatcaatagcttaatattacaaaatgttatgagagaatatatgataaa-cctaatggactctaacttactaatataaaggcctaatagcttaagccca 281  Q
    |||| ||||||||||||||||||||| ||||| | ||||||||| ||||| |||||||||||||||||| |||||||||||| | |||| ||||||||||    
T  15614244 aataacaatagcttaatattacaaaaggttataaaagaatatataataaaacctaatggactctaacttgctaatataaaggtccaataacttaagccca 15614343  T
Q  282 atactttattatctaaca 299  Q
    ||||||||||||||||||    
T  15614344 atactttattatctaaca 15614361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 174 - 299
Target Start/End: Original strand, 46963049 - 46963175
Alignment:
Q  174 tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaac-ctaatggactctaacttactaatataaaggcctaatagc 272  Q
    |||||||| |||| ||||||||||| ||||||||| ||||| ||||||||| | |||||  |||||||||||||||||||||||||||| ||| |||| |    
T  46963049 tttcattataataacaatagcttaacattacaaaaggttataagagaatatctaataaaatctaatggactctaacttactaatataaatgcccaataac 46963148  T
Q  273 ttaagcccaatactttattatctaaca 299  Q
    ||||||| |||||||||||||||||||    
T  46963149 ttaagcctaatactttattatctaaca 46963175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 2628237 - 2628354
Alignment:
Q  183 aatatcaatagcttaatattacaaaatgttatgagagaatatatgataaa-cctaatggactctaacttactaatataaaggcctaatagcttaagccca 281  Q
    ||||||||||| |||| |||||||||  |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |  |||| ||||||| ||    
T  2628237 aatatcaatagtttaacattacaaaaaattatgagagaatatataataaaacctaatggactctaacttactaatataaagactcaataacttaagctca 2628336  T
Q  282 atactttattatctaaca 299  Q
    ||||||||||||||||||    
T  2628337 atactttattatctaaca 2628354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 21814537 - 21814428
Alignment:
Q  189 aatagcttaatattacaaaatgttatgagagaatatatgataaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatacttt 288  Q
    ||||| |||| |||||||||   ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  21814537 aatagattaacattacaaaagaatattagagaatatataataaacctaatggactctaacttactaatataaaggcttaatatcttaagctcaatacttt 21814438  T
Q  289 attatctaac 298  Q
    ||||||||||    
T  21814437 attatctaac 21814428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 174 - 300
Target Start/End: Original strand, 46964403 - 46964530
Alignment:
Q  174 tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaac-ctaatggactctaacttactaatataaaggcctaatagc 272  Q
    |||||||| | || ||||||||||||||||||||| ||||| ||||||||||| |||||  ||||||||||||||| |||||||||||| ||| |||| |    
T  46964403 tttcattagactaacaatagcttaatattacaaaaagttataagagaatatataataaaatctaatggactctaacgtactaatataaatgcccaataac 46964502  T
Q  273 ttaagcccaatactttattatctaacag 300  Q
    ||||||| ||| ||||||||||||||||    
T  46964503 ttaagcctaatcctttattatctaacag 46964530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 21811739 - 21811668
Alignment:
Q  228 ataaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  21811739 ataaacctaattgactctaacttactaatataaaggcctaatagcttaaacccaatacattattatctaaca 21811668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 6840570 - 6840695
Alignment:
Q  154 ataacaacaaagacggcta--gtttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaa-cctaatggactctaactt 250  Q
    |||| ||||||||||| ||  ||||||| |||||||||||||||| | ||||||||| ||||| | ||||||||| ||||| ||||| ||||||||||||    
T  6840570 ataagaacaaagacggttatggtttcat-aaaatatcaatagctttacattacaaaaggttataaaagaatatataataaaacctaacggactctaactt 6840668  T
Q  251 actaatataaaggcctaatagcttaag 277  Q
    ||| ||||||||||| |||| ||||||    
T  6840669 actgatataaaggcccaataacttaag 6840695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 6841482 - 6841547
Alignment:
Q  234 ctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    |||| ||||||||||||||| ||||||||||| |||| |||||| || ||| ||||||||||||||    
T  6841482 ctaacggactctaacttactgatataaaggcccaataacttaagtccgatattttattatctaaca 6841547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 5763751 - 5763705
Alignment:
Q  180 taaaatatcaatagcttaatattacaaaatgttatgagagaatatat 226  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||    
T  5763751 taaaatatcaatatcttaatattacaaaatgttacaagagaatatat 5763705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 48643690 - 48643621
Alignment:
Q  230 aaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    ||||||||| ||||||||||| |||||||||||||| || | ||||| || |||| ||||| ||||||||    
T  48643690 aaacctaatagactctaacttgctaatataaaggcccaaaaacttaaacctaatattttatcatctaaca 48643621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 5763666 - 5763596
Alignment:
Q  231 aacctaatggact-ctaacttactaatataaaggcctaa-tagcttaagcccaatactttattatctaaca 299  Q
    ||||||||||||| ||| |||| |||||||||| || || || ||||||||||||||||||| ||||||||    
T  5763666 aacctaatggactactatcttagtaatataaagacccaaatatcttaagcccaatactttatcatctaaca 5763596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 33651346 - 33651300
Alignment:
Q  254 aatataaaggcctaatagcttaagcccaatactttattatctaacag 300  Q
    |||| ||||||| |||||||||||||||||| ||| |||||||||||    
T  33651346 aatacaaaggcccaatagcttaagcccaataatttgttatctaacag 33651300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 44337447 - 44337385
Alignment:
Q  200 attacaaaatgttatgagagaatatatgat-aaacctaatggactctaacttactaatataaa 261  Q
    ||||| ||||||||| ||||||||||| || ||| |||| |||||||||||||||| ||||||    
T  44337447 attactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaa 44337385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 3902454 - 3902389
Alignment:
Q  231 aacctaatggact-ctaacttactaatataaaggcctaatagcttaagcccaatactttattatct 295  Q
    ||||||||||||| |||| ||| |||||||||| || ||||  |||||| ||||||||||||||||    
T  3902454 aacctaatggactgctaatttagtaatataaagtcccaataaattaagctcaatactttattatct 3902389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 17921256 - 17921308
Alignment:
Q  245 taacttactaatataaaggcctaatagcttaagcccaatactttattatctaa 297  Q
    |||||||||||||||||| |  |||| |||||| | |||||||||||||||||    
T  17921256 taacttactaatataaagacacaataacttaagtctaatactttattatctaa 17921308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 26403573 - 26403493
Alignment:
Q  174 tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgat-aaacctaatggactctaacttact 253  Q
    ||||| || |||| ||||||| ||| ||||||||| ||||| ||||||||||| || ||| ||||| | ||||||||||||    
T  26403573 tttcaatagaataacaatagcataacattacaaaaagttataagagaatatataataaaatctaatcggctctaacttact 26403493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 299
Target Start/End: Complemental strand, 44339150 - 44339050
Alignment:
Q  200 attacaaaatgttatgagagaatatatgataaacct-aatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaac 298  Q
    ||||| ||||||||| | ||||||||| |||||  | ||  |||| ||||||||||||||||||| | |||| |||||  |||||| |||||||| ||||    
T  44339150 attactaaatgttataacagaatatataataaaatttaaaagactttaacttactaatataaaggtccaataacttaaatccaatattttattatttaac 44339051  T
Q  299 a 299  Q
    |    
T  44339050 a 44339050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 174 - 299
Target Start/End: Complemental strand, 8987053 - 8986927
Alignment:
Q  174 tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaacct-aatggactctaacttactaatataaaggcctaatagc 272  Q
    |||||||| | || ||||||||||| ||||||||| ||||| ||||||||||| |||||  | |||||||||||||||||||||||||| ||| |||| |    
T  8987053 tttcattagactaacaatagcttaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaatgcccaataac 8986954  T
Q  273 ttaagcccaatactttattatctaaca 299  Q
    ||||||| |||||||||||||||||||    
T  8986953 ttaagcctaatactttattatctaaca 8986927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 1172773 - 1172875
Alignment:
Q  197 aatattacaaaatgttatgagagaatatatgataaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatcta 296  Q
    ||||||| |||||||||||||||||||||| ||||| | |||||||||||| ||| |||||| |||||||||||| |||||  |||||||||||||||||    
T  1172773 aatattataaaatgttatgagagaatatataataaatcgaatggactctaatttattaatattaaggcctaatagtttaagtacaatactttattatcta 1172872  T
Q  297 aca 299  Q
    |||    
T  1172873 aca 1172875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 174 - 299
Target Start/End: Complemental strand, 8985700 - 8985574
Alignment:
Q  174 tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaac-ctaatggactctaacttactaatataaaggcctaatagc 272  Q
    |||||||| | || ||||||||||| ||||||||| ||||| ||||||||||| |||||  |||||||||| ||||||||||||||||| | | |||| |    
T  8985700 tttcattagactaacaatagcttaacattacaaaaggttataagagaatatataataaaatctaatggactttaacttactaatataaatgtccaataac 8985601  T
Q  273 ttaagcccaatactttattatctaaca 299  Q
    ||||||| |||||||||||||||||||    
T  8985600 ttaagcctaatactttattatctaaca 8985574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 32291272 - 32291155
Alignment:
Q  183 aatatcaatagcttaatattacaaaatgttatgagagaatatatgataaacct-aatggactctaacttactaatataaaggcctaatagcttaagccca 281  Q
    ||||||||| ||||   ||||||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||||||||| |  |||| ||||||| ||    
T  32291272 aatatcaattgcttttcattacaaaaggttataagagaatatataataaatcttaatggactctaacttactaatataaagacacaataacttaagctca 32291173  T
Q  282 atactttattatctaaca 299  Q
    ||||||||||||||||||    
T  32291172 atactttattatctaaca 32291155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 29409118 - 29409182
Alignment:
Q  235 taatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    ||||||||||||||||||||| ||||| ||  |||||||||||| ||||||||||||||||||||    
T  29409118 taatggactctaacttactaaaataaatgctcaatagcttaagcacaatactttattatctaaca 29409182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 32277008 - 32276938
Alignment:
Q  230 aaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaacagt 301  Q
    |||||||||||||||||||||||||||||||||| | |||| ||||||| |||||| | |||||||||||||    
T  32277008 aaacctaatggactctaacttactaatataaaggtccaataacttaagctcaatac-taattatctaacagt 32276938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 38583502 - 38583602
Alignment:
Q  200 attacaaaatgttatgagagaatatatgataaac-ctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaac 298  Q
    ||||||||| ||||| || |||||||| |||||  |||| ||  ||||||||||||||||||||||| ||||  ||||||| |||| |||||||||||||    
T  38583502 attacaaaaggttataagcgaatatataataaaatctaacgggttctaacttactaatataaaggcccaataatttaagcctaatattttattatctaac 38583601  T
Q  299 a 299  Q
    |    
T  38583602 a 38583602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 1175437 - 1175470
Alignment:
Q  48 tcccaaacttttgggattcgacagcggaagcgac 81  Q
    ||||||||||||||||||||||||||||||||||    
T  1175437 tcccaaacttttgggattcgacagcggaagcgac 1175470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 188 - 299
Target Start/End: Original strand, 14525 - 14638
Alignment:
Q  188 caatagcttaatattacaaaatgttatgagagaatatatgataaacctaatggactct-aacttactaat-ataaaggcctaatagcttaagcccaatac 285  Q
    ||||||||||||| ||||||| ||||| |||||||||||   ||||||||  |||| | |||||| |||| ||||||||| |||||||||||||||||||    
T  14525 caatagcttaatactacaaaaggttataagagaatatatataaaacctaacagactatgaacttagtaatgataaaggcccaatagcttaagcccaatac 14624  T
Q  286 tttattatctaaca 299  Q
    ||||||||||||||    
T  14625 tttattatctaaca 14638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 188 - 299
Target Start/End: Original strand, 406244 - 406356
Alignment:
Q  188 caatagcttaatattacaaaatgttatgagagaatatatgataaacct-aatggactctaacttactaatataaaggcctaatagcttaagcccaatact 286  Q
    ||||| |||||||||| |||| ||||| | ||||||||| ||||| || || |||||||||||| |||||||||||||| |||| ||||| || ||||||    
T  406244 caataacttaatattagaaaaggttataatagaatatataataaaacttaaaggactctaacttgctaatataaaggcccaataacttaaacctaatact 406343  T
Q  287 ttattatctaaca 299  Q
    |||||||||||||    
T  406344 ttattatctaaca 406356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 299
Target Start/End: Complemental strand, 11332 - 11187
Alignment:
Q  156 aacaacaaagacggctag--tttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaacct-aatggactctaacttac 252  Q
    ||||||||| ||||||||  |||||| ||||||||||||| |||| ||||||||| ||||| ||||||||||  ||||| || |||| ||| ||||||||    
T  11332 aacaacaaatacggctagagtttcat-aaaatatcaatagtttaacattacaaaaggttataagagaatatacaataaaacttaatgcactttaacttac 11234  T
Q  253 taatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    |||||||  |||  |||| || |||||||||| ||||||||||||||    
T  11233 taatatattggctcaataactgaagcccaatagtttattatctaaca 11187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 297
Target Start/End: Complemental strand, 24137715 - 24137600
Alignment:
Q  183 aatatcaatagcttaatattacaaaatgttatgagagaatatatgataaa-cctaatggactctaacttactaatataaaggcctaatagcttaagccca 281  Q
    ||||||||| |||||| |||||| || ||||| ||||||||||| ||||| |||||| ||||||||||||||| | |||||||| |||| || |||| ||    
T  24137715 aatatcaattgcttaacattacagaaggttataagagaatatataataaaacctaatagactctaacttactagtgtaaaggcccaataactgaagctca 24137616  T
Q  282 atactttattatctaa 297  Q
    |||||||||| |||||    
T  24137615 atactttattgtctaa 24137600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 11320486 - 11320585
Alignment:
Q  200 attacaaaatgttatgagagaatatatgataaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    ||||||||| ||||| ||||||||||| |||||  |||||||||| |||||||||||||||||  | |||| |||||| | ||||| |||||||||||||    
T  11320486 attacaaaaggttataagagaatatataataaaattaatggactccaacttactaatataaagagccaataacttaagtctaatacattattatctaaca 11320585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 297
Target Start/End: Original strand, 11343894 - 11344032
Alignment:
Q  159 aacaaagacggcta--gtttcattaaaatatcaatagcttaatattacaaaa-tgttatgagagaatatatgataaacctaatggactctaacttactaa 255  Q
    ||||||||||||||  ||||||| |||||  ||||||||||| ||||||||| |||||| ||||| ||||| ||||| || |  ||||||||||||||||    
T  11343894 aacaaagacggctaaggtttcataaaaat--caatagcttaacattacaaaaatgttataagagagtatataataaaacttaatgactctaacttactaa 11343991  T
Q  256 tataaaggcctaatagcttaagcccaatactttattatctaa 297  Q
    ||||||   | ||||  |||||||||||||||||||||||||    
T  11343992 tataaatagccaata-attaagcccaatactttattatctaa 11344032  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 9512559 - 9512489
Alignment:
Q  189 aatagcttaatattacaaaatgttatg--agagaatatatgataaacctaatggactctaacttactaatat 258  Q
    ||||| |||||||||||||| ||| ||  ||||||||||| |||||||||||||||||||| ||||||||||    
T  9512559 aatagattaatattacaaaaggtt-tgcaagagaatatataataaacctaatggactctaatttactaatat 9512489  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 6643404 - 6643359
Alignment:
Q  253 taatataaaggcctaatagcttaagcccaatactttattatctaac 298  Q
    |||||||| | || |||| |||||||||||||||||||||||||||    
T  6643404 taatataatgacccaataacttaagcccaatactttattatctaac 6643359  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 43414211 - 43414101
Alignment:
Q  188 caatagcttaatattacaaaatgttatgagagaatatatgataaacctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactt 287  Q
    |||||| | |||||||||||| ||||||||||||||||| |||||  ||  ||||||||||||| ||||||||| |   |||| ||| || |||||||||    
T  43414211 caatagttgaatattacaaaaggttatgagagaatatataataaatttagcggactctaacttattaatataaaagttcaataactt-agtccaatactt 43414113  T
Q  288 tattatctaaca 299  Q
    |||||| |||||    
T  43414112 tattatttaaca 43414101  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 43615523 - 43615458
Alignment:
Q  234 ctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    |||||||||||||||||||||||||||| ||  |||| || |||  ||||| ||||||||||||||    
T  43615523 ctaatggactctaacttactaatataaaagctcaataactaaagttcaatattttattatctaaca 43615458  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 20241125 - 20241063
Alignment:
Q  200 attacaaaatgttatgagagaatatatgat-aaacctaatggactctaacttactaatataaa 261  Q
    ||||| ||||||||| ||||||||||| || ||| |||| |||||||||||||||| ||||||    
T  20241125 attactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaa 20241063  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 20251942 - 20252004
Alignment:
Q  200 attacaaaatgttatgagagaatatatgat-aaacctaatggactctaacttactaatataaa 261  Q
    ||||| ||||||||| ||||||||||| || ||| |||| |||||||||||||||| ||||||    
T  20251942 attactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaa 20252004  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 14699765 - 14699825
Alignment:
Q  241 actctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaacagt 301  Q
    |||| |||||||||||||| ||||   || | ||||||| |||||||||||||||||||||    
T  14699765 actccaacttactaatatagaggctcgattgattaagcctaatactttattatctaacagt 14699825  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 299
Target Start/End: Complemental strand, 20242827 - 20242727
Alignment:
Q  200 attacaaaatgttatgagagaatatatgataaacct-aatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaac 298  Q
    ||||| ||||||||| | ||||||||| |||||  | ||  |||| ||||||||||||||||||| | |||| |||||  |||||| |||||||| ||||    
T  20242827 attactaaatgttataacagaatatataataaaatttaaaagactttaacttactaatataaaggtccaataacttaaatccaatattttattatttaac 20242728  T
Q  299 a 299  Q
    |    
T  20242727 a 20242727  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 20250333 - 20250433
Alignment:
Q  200 attacaaaatgttatgagagaatatatgataaacct-aatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaac 298  Q
    ||||| ||||||||| | ||||||||| |||||  | ||  |||| ||||||||||||||||||| | |||| |||||  |||||| |||||||| ||||    
T  20250333 attactaaatgttataacagaatatataataaaatttaaaagactttaacttactaatataaaggtccaataacttaaatccaatattttattatttaac 20250432  T
Q  299 a 299  Q
    |    
T  20250433 a 20250433  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 14306 - 14364
Alignment:
Q  241 actctaacttactaatataaaggcctaatagcttaagcccaatactttattatctaaca 299  Q
    |||||||||||||||||||||||||  |||  |||||||||||| |||||||| |||||    
T  14306 actctaacttactaatataaaggccccataatttaagcccaatattttattatttaaca 14364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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