View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_140 (Length: 235)
Name: NF1297_low_140
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_140 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8136616 - 8136395
Alignment:
| Q |
1 |
tagtaattaagggttgggcccctcagttattgattttgtcacatcctgcaattggaggattcttaacacattgtggttggaattctactatagaagcaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
8136616 |
tagtaattaagggttgggcccctcagttattgattttgtcacatcctgcaattggaggattcttaacacattgtggttggaattctacaatggaagcaat |
8136517 |
T |
|
| Q |
101 |
atgtgctggtgtaccaatggttacatggccactttttggagatcaattttttaatgaatgtttaattgtgcaaatactgaaagttggtgtaaaaattggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
8136516 |
atgtgctggtgtaccaatggttacatggccactttttggagatcaattttttaatgaatgtttagttgtgcaaatattgaaagttggtgtaaaaattggg |
8136417 |
T |
|
| Q |
201 |
gtgaagagtcctatgcaatggg |
222 |
Q |
| |
|
||||||||||| |||||||||| |
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| T |
8136416 |
gtgaagagtccaatgcaatggg |
8136395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41518088 - 41518309
Alignment:
| Q |
1 |
tagtaattaagggttgggcccctcagttattgattttgtcacatcctgcaattggaggattcttaacacattgtggttggaattctactatagaagcaat |
100 |
Q |
| |
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|||| ||||| |||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
41518088 |
tagtgattaaaggttgggctcctcagttattgatattgtcgcatcttgcaattggaggattcttaacacattgtggttggaattctactcttgaagcaat |
41518187 |
T |
|
| Q |
101 |
atgtgctggtgtaccaatggttacatggccactttttggagatcaattttttaatgaatgtttaattgtgcaaatactgaaagttggtgtaaaaattggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||| | ||||||||||| ||||||||| |
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| T |
41518188 |
atgtgctggtgtaccaatggttacatggccactttttgcagaccaatttttgaatgaatgtttagttgtgcaaatattaaaagttggtgtgaaaattggg |
41518287 |
T |
|
| Q |
201 |
gtgaagagtcctatgcaatggg |
222 |
Q |
| |
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||||||||||||||| |||||| |
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| T |
41518288 |
gtgaagagtcctatgaaatggg |
41518309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41537067 - 41537288
Alignment:
| Q |
1 |
tagtaattaagggttgggcccctcagttattgattttgtcacatcctgcaattggaggattcttaacacattgtggttggaattctactatagaagcaat |
100 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
41537067 |
tagtgattaagggttgggctcctcagttattgatattgtcgcatcttgcaattggaggattcttaacacattgtggttggaattctactcttgaagcaat |
41537166 |
T |
|
| Q |
101 |
atgtgctggtgtaccaatggttacatggccactttttggagatcaattttttaatgaatgtttaattgtgcaaatactgaaagttggtgtaaaaattggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||| | ||||||||||| ||||||||| |
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| T |
41537167 |
atgtgctggtgtaccaatggttacatggccactttttgcggatcaatttttgaatgaaagttttgttgtgcaaatattaaaagttggtgtgaaaattggg |
41537266 |
T |
|
| Q |
201 |
gtgaagagtcctatgcaatggg |
222 |
Q |
| |
|
||||||||||||||| |||||| |
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|
| T |
41537267 |
gtgaagagtcctatgaaatggg |
41537288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 41564508 - 41564613
Alignment:
| Q |
52 |
ttggaggattcttaacacattgtggttggaattctactatagaagcaatatgtgctggtgtaccaatggttacatggccactttttggagatcaattttt |
151 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||| |||||| |||||||||| | || |||||||| ||||| |
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| T |
41564508 |
ttggaggattcttaacacactgtggctggaattcgacgttagaagcaatatgtgctggtgtgccaatgattacatggccgttattcggagatcagttttt |
41564607 |
T |
|
| Q |
152 |
taatga |
157 |
Q |
| |
|
|||||| |
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|
| T |
41564608 |
taatga |
41564613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 48532777 - 48532823
Alignment:
| Q |
39 |
tcacatcctgcaattggaggattcttaacacattgtggttggaattc |
85 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||| |||||||| |
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| T |
48532777 |
tcacacccttcaattggaggattcttaacacattgtggatggaattc |
48532823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 95
Target Start/End: Complemental strand, 3755344 - 3755315
Alignment:
| Q |
66 |
acacattgtggttggaattctactatagaa |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
3755344 |
acacattgtggttggaattctactatagaa |
3755315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 157
Target Start/End: Original strand, 41562605 - 41562726
Alignment:
| Q |
36 |
ttgtcacatcctgcaattggaggattcttaacacattgtggttggaattctactatagaagcaatatgtgctggtgtaccaatggttacatggccacttt |
135 |
Q |
| |
|
|||||||||||| ||| ||| ||||| ||| | ||||||||||||||||| || || |||||||| | ||||||||||||| | || |||||| | | |
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| T |
41562605 |
ttgtcacatccttcaactggtggatttttatctcattgtggttggaattcaacaatggaagcaatttcaagtggtgtaccaatgataacttggccaatgt |
41562704 |
T |
|
| Q |
136 |
ttggagatcaattttttaatga |
157 |
Q |
| |
|
||| || ||||| |||||||| |
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| T |
41562705 |
ttgctgaacaattctttaatga |
41562726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 20155244 - 20155287
Alignment:
| Q |
42 |
catcctgcaattggaggattcttaacacattgtggttggaattc |
85 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| |||||||| |
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|
| T |
20155244 |
catccttcaattggaggattcttgacacattgtggatggaattc |
20155287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 20156881 - 20156831
Alignment:
| Q |
66 |
acacattgtggttggaattctactatagaagcaatatgtgctggtgtacca |
116 |
Q |
| |
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||||||||||| |||||||| || ||||||| |||||||||||||||||| |
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| T |
20156881 |
acacattgtggatggaattcaacattagaagctatatgtgctggtgtacca |
20156831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 35774660 - 35774621
Alignment:
| Q |
49 |
caattggaggattcttaacacattgtggttggaattctac |
88 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||||||| |
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| T |
35774660 |
caattgggggattcttaactcattgtggttggaattctac |
35774621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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