View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_142 (Length: 234)
Name: NF1297_low_142
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_142 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 46808332 - 46808451
Alignment:
| Q |
115 |
gaacgtcgtcctggacaacagagacctacacgcgaaggtcgttgggaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaac |
214 |
Q |
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| T |
46808332 |
gaacgtcgtcctggacaacagagacctacacgcgaaggtcgttggaaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaac |
46808431 |
T |
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| Q |
215 |
gagagaaagaggagcgacaa |
234 |
Q |
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| T |
46808432 |
gtgagaaagaggagcgacaa |
46808451 |
T |
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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 46808098 - 46808196
Alignment:
| Q |
115 |
gaacgtcgtcctggacaacagagacctacacgcgaaggtcgttgggaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaa |
213 |
Q |
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| T |
46808098 |
gaacgtcgtcctggagaatggagacctccacgtggaggtcgtcaagaaggccaagaacaacgccctggacaatggagaccttcacatgaaagggaggaa |
46808196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 46808219 - 46808282
Alignment:
| Q |
116 |
aacgtcgtcctggacaacagagacctacacgcgaaggtcgttgggaaggccaagaacaacgccc |
179 |
Q |
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| T |
46808219 |
aacgtcgtcctggacaatggagacctacacgtggaggtcgccaggaaggccaagaacaacgccc |
46808282 |
T |
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