View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_143 (Length: 234)
Name: NF1297_low_143
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_143 |
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| [»] chr6 (3 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 27879258 - 27879074
Alignment:
| Q |
50 |
acacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgc |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27879258 |
acacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgc |
27879159 |
T |
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| Q |
150 |
aaagttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgcacc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27879158 |
aaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcacc |
27879074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 30986430 - 30986478
Alignment:
| Q |
175 |
taaatgcaattggttggggcatgactctttcactagtataaatagcatg |
223 |
Q |
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|||||| |||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
30986430 |
taaatgtaattggttggggcatggctctttcactaatataaatagcatg |
30986478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 30966566 - 30966605
Alignment:
| Q |
184 |
ttggttggggcatgactctttcactagtataaatagcatg |
223 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |
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| T |
30966566 |
ttggttggggcatggctctttcactagtataaatagcatg |
30966605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 30950731 - 30950547
Alignment:
| Q |
50 |
acacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgc |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30950731 |
acacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgc |
30950632 |
T |
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| Q |
150 |
aaagttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgcacc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30950631 |
aaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcacc |
30950547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 30946025 - 30945841
Alignment:
| Q |
50 |
acacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgc |
149 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30946025 |
acacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgc |
30945926 |
T |
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| Q |
150 |
aaagttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgcacc |
234 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30945925 |
aaagttgaaaattcacatgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcacc |
30945841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 48702352 - 48702168
Alignment:
| Q |
50 |
acacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgc |
149 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48702352 |
acacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgc |
48702253 |
T |
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| Q |
150 |
aaagttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgcacc |
234 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48702252 |
aaagttgaaaatccacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcacc |
48702168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 48697663 - 48697481
Alignment:
| Q |
50 |
acacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgc |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48697663 |
acacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgc |
48697564 |
T |
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| Q |
150 |
aaagttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgca |
232 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48697563 |
aaagttgaaaattcacatgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgca |
48697481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 54 - 234
Target Start/End: Complemental strand, 5199182 - 5199002
Alignment:
| Q |
54 |
aggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgcaaag |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5199182 |
aggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgcaaag |
5199083 |
T |
|
| Q |
154 |
ttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgcacc |
234 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5199082 |
ttgaaaatccacacgctgccataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcacc |
5199002 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 34614301 - 34614229
Alignment:
| Q |
63 |
gtaaagccac-ttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacat |
134 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
34614301 |
gtaaagccaccttttgttgaattgttgtcacatggcagtaaaacatgttagcatgtaatttctatgtttacat |
34614229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 28715678 - 28715731
Alignment:
| Q |
170 |
tgccataaatgcaattggttggggcatgactctttcactagtataaatagcatg |
223 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
28715678 |
tgccataaatgtaaatggttggggcatggttctttcactcctataaatagcatg |
28715731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 2817783 - 2817598
Alignment:
| Q |
50 |
acacaggaaagtgg-taaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatg |
148 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2817783 |
acacaggaaagtgcataaagccacttttgttgaattgttatcacatggcagtaaaatatgttggcatgtaatttctatgttcacatgggaagttactatg |
2817684 |
T |
|
| Q |
149 |
caaagttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgtcccttgcacc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2817683 |
caaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcactagtatacatagcatgtcccttgcacc |
2817598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 29585821 - 29585662
Alignment:
| Q |
50 |
acacaggaaagtggtaaagccacttttgttgaagtgttatcacatggcagtaaaacatgttggcatgtaatttctatgttcacatggaaagttactatgc |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
29585821 |
acacaggaaagtggtaaagccacttttgttgaattgttatcacatggcagtaaaacatgttggcatgtagtttttatgttcacatggaaagttactatgc |
29585722 |
T |
|
| Q |
150 |
aaagttgaaaattcacacgctgccataaatgcaattggttggggcatgactctttcacta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
29585721 |
aaagttgaaaattcacacgctgccataaatgcaattggttggggcatggctctttcacta |
29585662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 30234920 - 30234974
Alignment:
| Q |
170 |
tgccataaatgcaattggttggggcatgactctttcactagtataaatagcatgt |
224 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
30234920 |
tgccataaatgtaattggttggggcatggctctttcactagtataaatagcatgt |
30234974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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