View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_low_145 (Length: 224)

Name: NF1297_low_145
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_low_145
NF1297_low_145
[»] chr1 (5 HSPs)
chr1 (1-224)||(47717018-47717241)
chr1 (1-224)||(47744811-47745033)
chr1 (4-224)||(47712263-47712498)
chr1 (1-140)||(47713816-47713966)
chr1 (1-76)||(47759276-47759350)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 47717241 - 47717018
Alignment:
Q  1 ttcataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaagagacagatggcaaagaaaaatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47717241 ttcataataataagttgtgatggttaacagagttttgcattcaaatagagacaacctagaagcagtaattccaaaagagacagatggcaaagaaaaatgg 47717142  T
Q  101 aagccaatagttataagtattttgattttaaaaattagatattagcatatttttctaacatgccttgtacattgtttgaagatatagaagatgataatga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  47717141 aagccaatagttataagtattttgattttaaaaattagatattagcatatttttctaacatgccttgtacattgtttgaagatatagaagatgataataa 47717042  T
Q  201 tgatattgaaatcgctgagtcatt 224  Q
    ||||||||||||||||||||||||    
T  47717041 tgatattgaaatcgctgagtcatt 47717018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 47745033 - 47744811
Alignment:
Q  1 ttcataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaagagacagatggcaaagaaaaatgg 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| |||| ||||||| |||||||||||||||    
T  47745033 ttcataataataagttgtgatggttaacaaagttttgcattcaaaaagagaaaacctagatgcagtaattcaaaaatagacagaaggcaaagaaaaatgg 47744934  T
Q  101 aagccaatagttataagtattttgattttaaaaattagatattagcatatttttctaacatgccttgtacattgtttgaagatat---agaagatgataa 197  Q
    |||||     || ||     ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||   ||||||||| ||    
T  47744933 aagcc----tttgtacaatgtttgattttaaaaattagatattagcatattttcctaacatgccttgtacaatgtttgaagatataaaagaagatgaaaa 47744838  T
Q  198 tgatgatattgaaatcgctgagtcatt 224  Q
    | |||||||||||||| ||| ||||||    
T  47744837 taatgatattgaaatcactgcgtcatt 47744811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 47712498 - 47712263
Alignment:
Q  4 ataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaagagacagat-ggcaaagaaaaatggaa 102  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||| ||| |||||| |||| ||| | |  || |||||||||||||     
T  47712498 ataataataagttgtgatggttaaca---ttttgcattcaaatagagaaaacctagatgcaataattcaaaaatagaaaaaaagggaaagaaaaatggac 47712402  T
Q  103 gccaatagttataagtattttgattttaaaaattagatattagcatattttt--------------ctaacatgccttgtacattgtttgaagatataga 188  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||||||||||              |||||||||||||||   |||||||||| |||||    
T  47712401 gccaatagtcataagtttttttattttaaaaattagatattagcatatttttctatttttactttactaacatgccttgtatcatgtttgaagaaataga 47712302  T
Q  189 ag---atgataatgatgatattgaaatcgctgagtcatt 224  Q
    ||   ||||||||||||||||||||||||||||||||||    
T  47712301 agaaaatgataatgatgatattgaaatcgctgagtcatt 47712263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 47713966 - 47713816
Alignment:
Q  1 ttcataataataagttgtg--atggttaacagagttttgcattcaaatagagaaaacctagaagcagtaat---------tccaaaagagacagatggca 89  Q
    |||||||||||||||||||  ||| |||||| ||  |||| |||||||| | |||||||||| ||||||||         || |||| ||| ||| || |    
T  47713966 ttcataataataagttgtgtgatgattaacaaagcgttgctttcaaatataaaaaacctagatgcagtaatagtaataattcaaaaatagaaagaaggga 47713867  T
Q  90 aagaaaaatggaagccaatagttataagtattttgattttaaaaattagat 140  Q
    |||||||||| |||||| |||| |||||| |||||||| ||||||||||||    
T  47713866 aagaaaaatgcaagccattagtcataagtgttttgattataaaaattagat 47713816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 47759350 - 47759276
Alignment:
Q  1 ttcataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaa 76  Q
    ||||||||| |||||||| |||||||||| ||||||||||||||||| | |||| ||||| | |||||||| ||||    
T  47759350 ttcataatattaagttgtaatggttaacaaagttttgcattcaaata-aaaaaaactagatgtagtaattcaaaaa 47759276  T

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