View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1297_low_147 (Length: 213)
Name: NF1297_low_147
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_147 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 46808350 - 46808451
Alignment:
| Q |
112 |
cagagacctacacgcgaaggtcgttgggaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaacgagagaaagaggagcgac |
211 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46808350 |
cagagacctacacgcgaaggtcgttggaaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaacgtgagaaagaggagcgac |
46808449 |
T |
|
| Q |
212 |
aa |
213 |
Q |
| |
|
|| |
|
|
| T |
46808450 |
aa |
46808451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 46808118 - 46808196
Alignment:
| Q |
114 |
gagacctacacgcgaaggtcgttgggaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaa |
192 |
Q |
| |
|
||||||| |||| | ||||||| |||||||||||||||||||||| ||||||||||||||||| || || ||||||| |
|
|
| T |
46808118 |
gagacctccacgtggaggtcgtcaagaaggccaagaacaacgccctggacaatggagaccttcacatgaaagggaggaa |
46808196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University