View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_low_19 (Length: 517)

Name: NF1297_low_19
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_low_19
NF1297_low_19
[»] chr8 (2 HSPs)
chr8 (50-508)||(33553864-33554322)
chr8 (76-149)||(29059016-29059089)
[»] chr3 (3 HSPs)
chr3 (64-137)||(25552053-25552126)
chr3 (78-141)||(27292314-27292377)
chr3 (80-117)||(582310-582347)
[»] chr5 (2 HSPs)
chr5 (267-375)||(7024519-7024630)
chr5 (96-144)||(35819374-35819422)
[»] chr2 (2 HSPs)
chr2 (61-110)||(44433604-44433653)
chr2 (71-143)||(12272043-12272117)
[»] chr7 (1 HSPs)
chr7 (77-139)||(17940251-17940313)
[»] chr4 (1 HSPs)
chr4 (97-145)||(33532103-33532151)


Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 50 - 508
Target Start/End: Complemental strand, 33554322 - 33553864
Alignment:
Q  50 tcagtttaaaattaaaacaatctcaactgttaatttgagatcggacagttgagatcgaaaactgcgtgacacaattactgcaccaaatccaaatcccaaa 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33554322 tcagtttaaaattaaaacaatctcaactgttaatttgagatcggacagttgagatcgaaaactgcgtgacacaattactgcaccaaatccaaatcccaaa 33554223  T
Q  150 agaatatttaaccaagtaaagctaccaaacatttcacaataagaatattcaactgctaattaaccacacatttgtagacggtctcacataaagctaccaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33554222 agaatatttaaccaagtaaagctaccaaacatttcacaataagaatattcaactgctaattgaccacacatttgtagacggtctcacataaagctaccaa 33554123  T
Q  250 gtaattatttaaccagctccttaggtatcaggtatcgaaaagtgaagttgtgtggaatccattcaatgctcttcccggattttgcatgacatttcttaac 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33554122 gtaattatttaaccagctccttaggtatcaggtatcgaaaagtgaagttgtgtggaatccattctatgctcttcccggattttgcatgacatttcttaac 33554023  T
Q  350 actctttctcagggattcaggtagagactgttggatcatctctataagaccagcatgagacaaacctgaatctttggagaatgtatctacaatcttagga 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33554022 actctttctcagggattcaggtagagactgttggatcatctctataagaccagcatgagacaaacctgaatctttggagaatgtatctacaatcttagga 33553923  T
Q  450 agcagcattttttggtccttgcgtatcccaaacgtggctctaatgtactcttcctttgc 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33553922 agcagcattttttggtccttgcgtatcccaaacgtggctctaatgtactcttcctttgc 33553864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 29059089 - 29059016
Alignment:
Q  76 ctgttaatttgagatcggacagttgagatcgaaaactgcgtgacacaattactgcaccaaatccaaatcccaaa 149  Q
    ||||||||||||||| | || || ||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  29059089 ctgttaatttgagattgaacggtcgagatcgaaaactgcttgacgcagttactgcaccaaatccaaatcccaaa 29059016  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 25552126 - 25552053
Alignment:
Q  64 aaacaatctcaactgttaatttgagatcggacagttgagatcgaaaactgcgtgacacaattactgcaccaaat 137  Q
    |||| ||||| ||||||||||||||||||||| |||||||| |||| |||| |||| ||| |||||||||||||    
T  25552126 aaactatctcgactgttaatttgagatcggacggttgagattgaaatctgcatgacgcaaatactgcaccaaat 25552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 27292377 - 27292314
Alignment:
Q  78 gttaatttgagatcggacagttgagatcgaaaactgcgtgacacaattactgcaccaaatccaa 141  Q
    |||||| ||||||| ||||||||||||||||||| | ||| | || ||||||||||||||||||    
T  27292377 gttaatctgagatcagacagttgagatcgaaaacagtgtggcgcagttactgcaccaaatccaa 27292314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 582347 - 582310
Alignment:
Q  80 taatttgagatcggacagttgagatcgaaaactgcgtg 117  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  582347 taatttgagatcagacagttgagatctaaaactgcgtg 582310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 375
Target Start/End: Original strand, 7024519 - 7024630
Alignment:
Q  267 tccttaggtatcaggtatcgaaaagtgaagttgtgtggaatccattcaatgctcttcccggattttgca---tgacatttcttaacactctttctcaggg 363  Q
    ||||||| ||| || |||| |||| ||||||| |||||||||||||| |||| ||||  |||||||| |   |||||||||||||| || || || || |    
T  7024519 tccttagatatgagatatctaaaattgaagttatgtggaatccattctatgcacttcttggattttggaatctgacatttcttaactcttttccttagtg 7024618  T
Q  364 attcaggtagag 375  Q
    ||||||||||||    
T  7024619 attcaggtagag 7024630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 35819374 - 35819422
Alignment:
Q  96 agttgagatcgaaaactgcgtgacacaattactgcaccaaatccaaatc 144  Q
    ||||||||||||||||||| ||||| | ||| |||||||||||||||||    
T  35819374 agttgagatcgaaaactgcctgacatagttaatgcaccaaatccaaatc 35819422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 44433653 - 44433604
Alignment:
Q  61 ttaaaacaatctcaactgttaatttgagatcggacagttgagatcgaaaa 110  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||| |||||    
T  44433653 ttaaagcaatctcgactgttaatttgagatcagacagttgagattgaaaa 44433604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 12272117 - 12272043
Alignment:
Q  71 ctcaactgttaatttgagat--cggacagttgagatcgaaaactgcgtgacacaattactgcaccaaatccaaat 143  Q
    ||||| |||||||| |||||  |||||||||| ||| ||||| || ||||||||||| |||||||| ||||||||    
T  12272117 ctcaattgttaattcgagatttcggacagttgggatagaaaattgtgtgacacaatttctgcaccatatccaaat 12272043  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 17940251 - 17940313
Alignment:
Q  77 tgttaatttgagatcggacagttgagatcgaaaactgcgtgacacaattactgcaccaaatcc 139  Q
    ||||||| |||||||  || | |||||| |||||||||||||| || ||||||||||||||||    
T  17940251 tgttaatctgagatcacacggatgagattgaaaactgcgtgacgcagttactgcaccaaatcc 17940313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 33532103 - 33532151
Alignment:
Q  97 gttgagatcgaaaactgcgtgacacaattactgcaccaaatccaaatcc 145  Q
    ||||||||||||||||| ||||| || ||||||||| ||| ||||||||    
T  33532103 gttgagatcgaaaactgtgtgacgcagttactgcactaaacccaaatcc 33532151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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