View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1297_low_21 (Length: 492)
Name: NF1297_low_21
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 30 - 485
Target Start/End: Original strand, 8788715 - 8789169
Alignment:
| Q |
30 |
ctacatgcatatagcatttgttgttaggaacttaggatataggaccacttcctcctatatatatagtcctactttcaccccctcccccactgtacaatat |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8788715 |
ctacatgcatatagcatttgttgttaggaacttaggatataggaccacttcctcctatctatatagtcctactttcaccccctcccccactgtacaatat |
8788814 |
T |
|
| Q |
130 |
acagtgttaatccctctctttaacagctttatgaggtggcctcccttctctttcggccttactcaatggtagggtgggcttataagtgcacactagctaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8788815 |
acagtgttaatccctctctttaacagctttatgaggtggcctcccttctctttcggccttactcaatggtagggtgggcttataagtgcacactagctaa |
8788914 |
T |
|
| Q |
230 |
gttatcctgatattaatgtaaaacttgttaaatttacatgtgcatgaaaattaaaccttttaaaataatgagaaaaagttgattaaatgaaaatgatatc |
329 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8788915 |
gttatgctgatattaatgtaaaacttgttaaatttacatgtgcatgaaaattaaacc-tttaaaataatgagaaaaagttgattaaatgaaaatgatatc |
8789013 |
T |
|
| Q |
330 |
agccataataatgacaatatagaacatgttcttgatcttaattgannnnnnngttctattcttaatgtttgggtgggggtggtatgcatttttgtgataa |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8789014 |
agccataataatgacaatatagaacatgttcttgatcttaattgatttttttgttctattcttaatgtttgggtgggggtggtatgtatttttgtgataa |
8789113 |
T |
|
| Q |
430 |
accaatgagctatatattcccacttaattggtctactactagccaggcctttgctt |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8789114 |
accaatgagctatatattcccacttaattggtctactactagccaggcctttgctt |
8789169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University