View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_22 (Length: 477)
Name: NF1297_low_22
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 448
Target Start/End: Original strand, 51755925 - 51756368
Alignment:
| Q |
11 |
caaagggaaagatgaagtttaccttgtattattatgac------gatgaagatgacattgacagagaatgcaaggaaagtgttgagacgttnnnnnnnnt |
104 |
Q |
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| T |
51755925 |
caaagggaaagatgaagtttaccttgtattattatgaccatgaagatgaagatgacattgacagagaatgcaaggagagtgttgagacgttaaaaaaaat |
51756024 |
T |
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| Q |
105 |
aacggaggaattatgggaagagaaagaaggaagattagggtggtgggagagttgggaaaacttgttgaggacaagaactggagagaacgaaggtgggtgg |
204 |
Q |
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| T |
51756025 |
aacggaggaattatgggaagagaaagaaggaagattagggtggtgggagagttgggaaaacttgttgaggacaagaactggagagaacgaaggtgggtgg |
51756124 |
T |
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| Q |
205 |
tatacatgccaagatttaacggtgattaatggcaacgttgttaggttttgggatgaagatttcgagtttgcttcctttgcaaatggaggaatcaaataac |
304 |
Q |
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| T |
51756125 |
tatacatgccaagatttaacggtgattaacggcaacgttgttaggttttgggatgaagagttcgagtttgcttcctttgcaaatggaggaatcaaataac |
51756224 |
T |
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| Q |
305 |
agcttcagttgtatgttcttgtatggtagtaatcactaattagattagatagagaaacataagtatgttataataatattgctatcatcaatgtatatat |
404 |
Q |
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| T |
51756225 |
agcttcagctgtatgttcttgtatggtagtaatcactaattagattagatagagaaacataagtatgttataataatattgttatcatcaatgtatatat |
51756324 |
T |
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| Q |
405 |
ggtggtgggttaattaatttggataacatatatcatgataagtt |
448 |
Q |
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| T |
51756325 |
ggtggtgggttaattaatttggataatatatatcatgataagtt |
51756368 |
T |
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