View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_low_26 (Length: 440)

Name: NF1297_low_26
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_low_26
NF1297_low_26
[»] chr3 (50 HSPs)
chr3 (62-261)||(6945732-6945931)
chr3 (72-294)||(8570334-8570553)
chr3 (72-293)||(6840275-6840496)
chr3 (62-261)||(8453099-8453295)
chr3 (151-293)||(6840627-6840769)
chr3 (62-261)||(6795984-6796180)
chr3 (68-261)||(8470024-8470214)
chr3 (62-294)||(6481355-6481584)
chr3 (175-297)||(6522968-6523087)
chr3 (175-297)||(6841059-6841178)
chr3 (175-293)||(6840924-6841039)
chr3 (62-296)||(7586300-7586531)
chr3 (72-297)||(6450177-6450399)
chr3 (70-293)||(6521516-6521733)
chr3 (72-297)||(6730105-6730327)
chr3 (70-293)||(6734385-6734602)
chr3 (151-295)||(6528475-6528616)
chr3 (223-297)||(6942364-6942438)
chr3 (152-297)||(6796209-6796354)
chr3 (175-293)||(6522023-6522138)
chr3 (175-293)||(6522158-6522273)
chr3 (77-261)||(8588276-8588457)
chr3 (69-294)||(6932026-6932246)
chr3 (175-261)||(6521888-6521971)
chr3 (175-261)||(6522293-6522376)
chr3 (175-261)||(6522833-6522916)
chr3 (69-196)||(6486375-6486502)
chr3 (70-261)||(6528262-6528447)
chr3 (70-293)||(6555828-6556045)
chr3 (175-261)||(6522563-6522646)
chr3 (151-297)||(6734102-6734245)
chr3 (151-297)||(6781418-6781561)
chr3 (175-293)||(6840789-6840904)
chr3 (153-294)||(6592810-6592948)
chr3 (99-211)||(4390320-4390432)
chr3 (175-261)||(6556200-6556283)
chr3 (102-293)||(6781093-6781278)
chr3 (233-293)||(6521808-6521868)
chr3 (233-293)||(6522483-6522543)
chr3 (233-293)||(6522753-6522813)
chr3 (175-261)||(6556065-6556148)
chr3 (151-225)||(6734315-6734389)
chr3 (151-225)||(6781274-6781348)
chr3 (233-294)||(5297179-5297240)
chr3 (153-280)||(6915549-6915673)
chr3 (233-280)||(6898536-6898583)
chr3 (153-280)||(6723536-6723660)
chr3 (153-280)||(6880964-6881088)
chr3 (179-219)||(5248683-5248723)
chr3 (175-261)||(6840516-6840599)
[»] scaffold1643 (1 HSPs)
scaffold1643 (99-297)||(598-796)
[»] scaffold0958 (1 HSPs)
scaffold0958 (72-260)||(1171-1357)
[»] scaffold0425 (3 HSPs)
scaffold0425 (70-261)||(8876-9061)
scaffold0425 (151-297)||(9224-9367)
scaffold0425 (151-257)||(9089-9192)
[»] chr7 (1 HSPs)
chr7 (62-260)||(6574695-6574890)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 4e-73; HSPs: 50)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 62 - 261
Target Start/End: Complemental strand, 6945931 - 6945732
Alignment:
Q  62 atcataggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggt 161  Q
    ||||| || ||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||| |||   |||  |||||||||||||||||    
T  6945931 atcatcggcgaagagttttacaacaatagtacaacaaatgttccgttcaggtcccttgaagttttgaaattggagcatatggtcaattgggaggaatggt 6945832  T
Q  162 tttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6945831 tttgtcctgaaaggtttcctttgcttaaagagcttactataagaaattgtcccaaattgaaaagggccttgctgcctcaacaccttccttctttacaaaa 6945732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 72 - 294
Target Start/End: Original strand, 8570334 - 8570553
Alignment:
Q  72 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 171  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||  |||||   |||||||||||||||||||||||||||||  |||    
T  8570334 aagagttttacggcaatagttcaacaattattccgttcaggtcccttgaagttttggaatttgcatggatgaacaattgggaggaatggttttgtattga 8570433  T
Q  172 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 271  Q
    ||||||||||||||||||| ||||| |||||||| |||||  || ||| |||||||||   ||||||| ||||||||||||||||||||| ||| ||||     
T  8570434 agggtttcctttgcttaaaaagctttctataagatattgtcacagattgaaaagggcc---ctgcctcgacaccttccttctttacaaaaactggagatc 8570530  T
Q  272 agtgattgcaacaagttggaggc 294  Q
    ||||||||||| |||||||||||    
T  8570531 agtgattgcaagaagttggaggc 8570553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 72 - 293
Target Start/End: Original strand, 6840275 - 6840496
Alignment:
Q  72 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 171  Q
    |||||||||||| |||   ||| |||| |||||| || ||||| ||||||||||||| |||||||  |||||||||||||||| |||||||||||| |||    
T  6840275 aagagttttacgacaacgattcgacaattgttccatttaggtcgcttgaagttttgaaatttgagaagatgaacaattgggagaaatggttttgtcttga 6840374  T
Q  172 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 271  Q
    ||||||||||||||||||| || || |||||||||| ||| ||||||| |||| |||  |||||||| |||||||| ||||||||||||||||| |||||    
T  6840375 agggtttcctttgcttaaaaagatttctataagaaaatgtcccaaattgaaaaaggcagtgctgcctaaacaccttacttctttacaaaagctggagatt 6840474  T
Q  272 agtgattgcaacaagttggagg 293  Q
    ||| ||||||||||||||||||    
T  6840475 agttattgcaacaagttggagg 6840496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 62 - 261
Target Start/End: Complemental strand, 8453295 - 8453099
Alignment:
Q  62 atcataggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggt 161  Q
    |||||||||||||||||||||| || |||||||| |||||| | ||||||||| ||||||||||||| |||||||  |||||||||||||||||||||||    
T  8453295 atcataggtgaagagttttacgacagtagttcaataaatgtgctgttcaggtctcttgaagttttgaaatttgagaagatgaacaattgggaggaatggt 8453196  T
Q  162 tttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
    | |||| ||||||||||||||||||||||||||||  ||||||| | ||| ||||||| |||| | ||   |||||||||||||||||||||||||||||    
T  8453195 tgtgtcttgaagggtttcctttgcttaaagagctttatataagagaatgtcccaaattgaaaatgtcc---ctgcctcaacaccttccttctttacaaaa 8453099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 151 - 293
Target Start/End: Original strand, 6840627 - 6840769
Alignment:
Q  151 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 250  Q
    |||| |||||||||||| ||||||| ||||||||||||||||| || |||||||||||||  |||||||||||||||||||||| |||||||||||||||    
T  6840627 ggagaaatggttttgtcttgaagggattcctttgcttaaagagatttctataagaaattgccccaaattaaaaagggccttgctacctcaacaccttcct 6840726  T
Q  251 tctttacaaaagctgaagattagtgattgcaacaagttggagg 293  Q
    ||||||||||| ||||||||| |||||||||||||||||||||    
T  6840727 tctttacaaaaactgaagatttgtgattgcaacaagttggagg 6840769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 62 - 261
Target Start/End: Original strand, 6795984 - 6796180
Alignment:
Q  62 atcataggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggt 161  Q
    ||||| |||||||| ||||||  ||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||    
T  6795984 atcattggtgaagaattttacaacaatagttcaacaaatgtttcgttcaggtcccttgaggttttgaaatttgaggagatggacaattgggaggaatggt 6796083  T
Q  162 tttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
    |||||| ||||||||||||||||||||||||||||  ||||| || ||||  | |||| ||||||||    | ||||||| |||||||||||||||||||    
T  6796084 tttgtcttgaagggtttcctttgcttaaagagctttatataacaagttgtcacgaattgaaaagggc---tcagcctcaaaaccttccttctttacaaaa 6796180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 8470214 - 8470024
Alignment:
Q  68 ggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtc 167  Q
    |||||||||||| | ||||| | |||||||||||||||||||  ||||||||||||||||| ||||| |  |||||||| ||||||||||||||| ||||    
T  8470214 ggtgaagagtttcatggcaacaattcaacaaatgttccgttcttgtcccttgaagttttgaaatttgtgaagatgaacagttgggaggaatggttgtgtc 8470115  T
Q  168 ctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
     |||||||||||||||||||||||||||| |||||| ||  ||| || |||| | ||| || |   ||||||||||||||||||||||||||||    
T  8470114 ttgaagggtttcctttgcttaaagagctttctataaaaagctgtcccgaattgagaagcgcat---tgcctcaacaccttccttctttacaaaa 8470024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 62 - 294
Target Start/End: Original strand, 6481355 - 6481584
Alignment:
Q  62 atcataggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggt 161  Q
    ||||| ||||||||||| || || |||| ||||| || || | | |||||||| ||||||||||||  |||| || ||||| | |||| |||||||||||    
T  6481355 atcatcggtgaagagttatatggaaataattcaaaaattgatgcattcaggtctcttgaagttttggaatttcagcggatggaaaatttggaggaatggt 6481454  T
Q  162 tttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
    | |||| |||||||||||  | |||||||||||||||||||| | ||||| ||||||| |||||||||   || ||||||||||||||||||||||| ||    
T  6481455 tatgtcatgaagggtttctgtcgcttaaagagcttactataaaagattgtcccaaattgaaaagggcc---cttcctcaacaccttccttctttacagaa 6481551  T
Q  262 gctgaagattagtgattgcaacaagttggaggc 294  Q
      ||  ||||| | |||||||||||||||||||    
T  6481552 attgtcgattattaattgcaacaagttggaggc 6481584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 175 - 297
Target Start/End: Original strand, 6522968 - 6523087
Alignment:
Q  175 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 274  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    ||||||||||||||||||||||||||||| ||||||||||||    
T  6522968 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaaactgaagattagt 6523064  T
Q  275 gattgcaacaagttggaggcatc 297  Q
     ||||||||||| ||||||||||    
T  6523065 aattgcaacaagatggaggcatc 6523087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 297
Target Start/End: Original strand, 6841059 - 6841178
Alignment:
Q  175 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 274  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    ||||||||||||||||||||||||||||| ||| ||||| |     
T  6841059 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaaactgcagatttgg 6841155  T
Q  275 gattgcaacaagttggaggcatc 297  Q
    |||||||||||| ||||||||||    
T  6841156 gattgcaacaagatggaggcatc 6841178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 6840924 - 6841039
Alignment:
Q  175 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 274  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    ||||||||||||||||||||||||||||| ||  ||||| |     
T  6840924 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaatctagagatttgg 6841020  T
Q  275 gattgcaacaagttggagg 293  Q
    |||||||||||||||||||    
T  6841021 gattgcaacaagttggagg 6841039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 62 - 296
Target Start/End: Complemental strand, 7586531 - 7586300
Alignment:
Q  62 atcataggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggt 161  Q
    ||||||||  |||| ||||| ||||||| ||| ||||||||||| ||||| ||||||||| || ||   |||||   ||||    | |||||||||||||    
T  7586531 atcatagggaaagaattttatggcaataattccacaaatgttccattcagatcccttgaaattctgcattttgattcgatgtcggaatgggaggaatggt 7586432  T
Q  162 tttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
        || |||||||||||||||||||||||||||| |||||| ||| ||| |||| || ||||||||    |||||||||||||||||||||||||| ||    
T  7586431 cacatcttgaagggtttcctttgcttaaagagctttctataaaaaaatgtcccaagttgaaaagggct---ctgcctcaacaccttccttctttacagaa 7586335  T
Q  262 gctgaagattagtgattgcaacaagttggaggcat 296  Q
     ||| ||||||  |||||||| |||||||| ||||    
T  7586334 actggagattaaagattgcaagaagttggaagcat 7586300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 72 - 297
Target Start/End: Original strand, 6450177 - 6450399
Alignment:
Q  72 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 171  Q
    ||||||| || || |||| ||||| || |||||| ||||| || |||||||| |||| |||||||  | || | ||||||||||||||||| | |  |||    
T  6450177 aagagttctatggaaataattcaataattgttccattcagatctcttgaagtattgaaatttgagcagttggagaattgggaggaatggttatttattga 6450276  T
Q  172 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 271  Q
    || ||||||| | ||||||||||||   |||||||||||| ||||| | |||||||||   |||||||||||||||||||||||| ||||  ||||||||    
T  6450277 agagtttcctctacttaaagagcttgaaataagaaattgtcccaaactgaaaagggcc---ctgcctcaacaccttccttctttagaaaaattgaagatt 6450373  T
Q  272 agtgattgcaacaagttggaggcatc 297  Q
      |  ||||||  |||||||||||||    
T  6450374 gtttgttgcaatgagttggaggcatc 6450399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 293
Target Start/End: Original strand, 6521516 - 6521733
Alignment:
Q  70 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 169  Q
    |||||| ||||| ||||||| |||||||| |||||| |||| ||||||| ||  ||||| |||| |||  |||  ||| |||||||||||| | |||       
T  6521516 tgaagatttttatggcaataattcaacaattgttccattcaagtcccttcaatatttgagatttcaggatatggtcaactgggaggaatggatatgt--- 6521612  T
Q  170 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaaga 269  Q
    | | |||||||| ||||||||||||||  ||||| ||||||| | ||||| |||||  ||   ||||||||||||||| |||||||||||||  ||||||    
T  6521613 gtaaggtttcctctgcttaaagagctttatataaaaaattgtcctaaattgaaaagcacc---ctgcctcaacacctttcttctttacaaaaattgaaga 6521709  T
Q  270 ttagtgattgcaacaagttggagg 293  Q
    | |||||||||||| |||||||||    
T  6521710 tcagtgattgcaacgagttggagg 6521733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 72 - 297
Target Start/End: Original strand, 6730105 - 6730327
Alignment:
Q  72 aagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctga 171  Q
    ||||||| || || |||| ||||| || |||||| |||||||| |||||||| |||| |||||||    || | ||||||||||||||||| | |  |||    
T  6730105 aagagttctatggaaataattcaataattgttccattcaggtctcttgaagtattgaaatttgagcaattggagaattgggaggaatggttatttattga 6730204  T
Q  172 agggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagatt 271  Q
    || ||||||| | ||||||||||||   |||||||||||| ||||| | |||||||||   |||||||||||||||||||||||| ||||  ||||||||    
T  6730205 agagtttcctctacttaaagagcttgaaataagaaattgtcccaaactgaaaagggcc---ctgcctcaacaccttccttctttagaaaaattgaagatt 6730301  T
Q  272 agtgattgcaacaagttggaggcatc 297  Q
      |  ||||||  |||||||||||||    
T  6730302 gtttgttgcaaagagttggaggcatc 6730327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 293
Target Start/End: Complemental strand, 6734602 - 6734385
Alignment:
Q  70 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 169  Q
    |||||||||||| ||||||| |||||||| |||||| |||| ||||||||||  ||||| ||||||||  |||  ||| |||||||||||| | ||   |    
T  6734602 tgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatg---t 6734506  T
Q  170 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaaga 269  Q
    | | ||||||||||||||| ||||||| |||||| ||||||| | ||| | ||| |  ||   ||||||||||| |||||||||||||||||  |||| |    
T  6734505 gtaaggtttcctttgcttatagagctttctataacaaattgtcctaaactgaaaggcacc---ctgcctcaacatcttccttctttacaaaaattgaata 6734409  T
Q  270 ttagtgattgcaacaagttggagg 293  Q
    |||||| ||||||  |||||||||    
T  6734408 ttagtggttgcaaagagttggagg 6734385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 151 - 295
Target Start/End: Original strand, 6528475 - 6528616
Alignment:
Q  151 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 250  Q
    |||||||||||| || | || || ||||||||||||||||||| || |||||| || |||| || |||| ||||||||    ||||||||||||||||||    
T  6528475 ggaggaatggttatgccttggagagtttcctttgcttaaagagatttctataacaagttgtcccgaattgaaaagggct---ctgcctcaacaccttcct 6528571  T
Q  251 tctttacaaaagctgaagattagtgattgcaacaagttggaggca 295  Q
    ||||||||||| ||| |||||| |||||||| |||| ||||||||    
T  6528572 tctttacaaaaactggagattattgattgcagcaagatggaggca 6528616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 6942438 - 6942364
Alignment:
Q  223 aagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggaggcatc 297  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||    
T  6942438 aagggccttgctgcctcaacaccttccttctttacaaaaactgaagattggttattgcaacaagatggaggcatc 6942364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 152 - 297
Target Start/End: Original strand, 6796209 - 6796354
Alignment:
Q  152 gaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcctt 251  Q
    ||||||||||| || |||| || ||||||||||||||||||| || || |||    ||||| ||| |||||||||| |||||| ||||||||||||||||    
T  6796209 gaggaatggttatgccctggagagtttcctttgcttaaagagatttctgtaaatgtttgttacaacttaaaaagggtcttgcttcctcaacaccttcctt 6796308  T
Q  252 ctttacaaaagctgaagattagtgattgcaacaagttggaggcatc 297  Q
    ||||||| ||  |||||||| |||||||| || ||||||| |||||    
T  6796309 ctttacagaaaatgaagattggtgattgctacgagttggaagcatc 6796354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 6522023 - 6522138
Alignment:
Q  175 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 274  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||| |||||||||||||||||||||||| ||| ||||| |     
T  6522023 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggct---ctgcatcaacaccttccttctttacaaaaactggagattcgg 6522119  T
Q  275 gattgcaacaagttggagg 293  Q
     ||||||||||||||||||    
T  6522120 aattgcaacaagttggagg 6522138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 6522158 - 6522273
Alignment:
Q  175 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 274  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||| |||||||||||||||||||||||| ||| ||||| |     
T  6522158 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggct---ctgcatcaacaccttccttctttacaaaatctggagattcgg 6522254  T
Q  275 gattgcaacaagttggagg 293  Q
     ||||||||||||||||||    
T  6522255 aattgcaacaagttggagg 6522273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 261
Target Start/End: Complemental strand, 8588457 - 8588276
Alignment:
Q  77 ttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctgaagggt 176  Q
    |||||||| ||||  ||||||| |||||| |||||||| ||||||||||||  |||| |  ||||| ||||||||||||||||| | || | | ||||||    
T  8588457 ttttacggaaataactcaacaattgttccattcaggtctcttgaagttttggaatttaaacggatggacaattgggaggaatggatatgccttcaagggt 8588358  T
Q  177 ttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
    |||||||||||||| ||||   ||||||  | ||| |  |||| |||||||| |   ||||||||||||||||||||||||||||    
T  8588357 ttcctttgcttaaaaagctatttataagtgaatgtcctgaattgaaaagggctt---tgcctcaacaccttccttctttacaaaa 8588276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 294
Target Start/End: Complemental strand, 6932246 - 6932026
Alignment:
Q  69 gtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcc 168  Q
    ||||||| ||||||| ||||| |  ||||| | |||| || ||||||||||||||||||||||||||   |||| |   || |||||||||||| ||||     
T  6932246 gtgaagaattttacgacaataat--aacaatttttccatttaggtcccttgaagttttgatatttgactagatgcattgtttggaggaatggttatgtct 6932149  T
Q  169 tgaagggtttcctttgcttaaagagctt-actataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaa 267  Q
    ||| |||||||||||||||| ||||||| |||  ||||   ||   | |||| ||||||||    || |||||||||||||||||||||||||| ||| |    
T  6932148 tgatgggtttcctttgcttagagagctttactc-aagaggatggctcgaattgaaaagggct---cttcctcaacaccttccttctttacaaaaactgga 6932053  T
Q  268 gattagtgattgcaacaagttggaggc 294  Q
    ||||||||||||| ||||||| |||||    
T  6932052 gattagtgattgccacaagtttgaggc 6932026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 6521888 - 6521971
Alignment:
Q  175 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||||||||||||||||||||||||||||    
T  6521888 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggc---tctgcctcaacaccttccttctttacaaaa 6521971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 6522293 - 6522376
Alignment:
Q  175 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||||||||||||||||||||||||||||    
T  6522293 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggc---tctgcctcaacaccttccttctttacaaaa 6522376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 6522833 - 6522916
Alignment:
Q  175 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
    ||||||||||||||||||| || |||||||||||||| || |||| ||||||||    |||||||||||||||||||||||||||||    
T  6522833 gtttcctttgcttaaagagatttctataagaaattgtcccgaattgaaaagggc---tctgcctcaacaccttccttctttacaaaa 6522916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 6486375 - 6486502
Alignment:
Q  69 gtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcc 168  Q
    ||||||| ||||||| ||||| |||||||| | |||| || ||||||||||||||||||||||||||   |||| |   || |||||| ||||| ||||     
T  6486375 gtgaagaattttacgacaataattcaacaatttttccatttaggtcccttgaagttttgatatttgactagatgcattgtttggaggactggttatgtct 6486474  T
Q  169 tgaagggtttcctttgcttaaagagctt 196  Q
    ||| |||||||||||||| |||||||||    
T  6486475 tgatgggtttcctttgctgaaagagctt 6486502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 261
Target Start/End: Original strand, 6528262 - 6528447
Alignment:
Q  70 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 169  Q
    |||||| ||||| | ||||| |||||||| |||||| |||| ||||||| || ||| ||||||||||   |||   || |||||| ||||| | ||||      
T  6528262 tgaagatttttatgacaataattcaacaattgttccattcaagtcccttcaattttcgatatttgagaatatggtgaactgggagaaatggatatgtct- 6528360  T
Q  170 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
      | ||||||||||||||||||||||| |||||||||||||| | ||||| |||||  |||   |||||||||| |||||||||||||||||    
T  6528361 --aaggtttcctttgcttaaagagctttctataagaaattgtcctaaattgaaaagcacct---tgcctcaacagcttccttctttacaaaa 6528447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 293
Target Start/End: Original strand, 6555828 - 6556045
Alignment:
Q  70 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 169  Q
    |||||||||||| ||||||| |||||||| |||||| |||| ||||||||||  ||||| ||||||||  |||  ||| |||||||||||| | ||   |    
T  6555828 tgaagagttttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatg---t 6555924  T
Q  170 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaaga 269  Q
    | | |||||||| ||||||||||||||  ||||  ||||||| | ||||| ||||| |   |  |||||||||| ||||| |||||||||||  ||  ||    
T  6555925 gtaaggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagag---tattgcctcaacatcttccatctttacaaaatttgtgga 6556021  T
Q  270 ttagtgattgcaacaagttggagg 293  Q
    | | ||||||||||| ||||||||    
T  6556022 tcaatgattgcaacatgttggagg 6556045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 6522563 - 6522646
Alignment:
Q  175 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
    ||||||||||||||||||| || |||||| ||||||| || |||| ||||||||    |||||||||||||||||||||||||||||    
T  6522563 gtttcctttgcttaaagagatttctataacaaattgtcccgaattgaaaagggc---tctgcctcaacaccttccttctttacaaaa 6522646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 297
Target Start/End: Complemental strand, 6734245 - 6734102
Alignment:
Q  151 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 250  Q
    |||||||||||| || | || || ||||||||||||||||||  || |||||   || |||||  |||| ||||||||    ||||| ||||||||||||    
T  6734245 ggaggaatggttatgccttggagagtttcctttgcttaaagatatttctatattcaaatgttctgaattgaaaagggct---ctgccacaacaccttcct 6734149  T
Q  251 tctttacaaaagctgaagattagtgattgcaacaagttggaggcatc 297  Q
    |||||||| || ||| ||||||| ||||||||||||||||| |||||    
T  6734148 tctttacagaaactggagattagagattgcaacaagttggaagcatc 6734102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 297
Target Start/End: Original strand, 6781418 - 6781561
Alignment:
Q  151 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 250  Q
    |||||||||||| || | || || ||||||||||||||||||  || |||||   || |||||  |||| ||||||||    ||||| ||||||||||||    
T  6781418 ggaggaatggttatgccttggagagtttcctttgcttaaagatatttctatattcaaatgttctgaattgaaaagggct---ctgccacaacaccttcct 6781514  T
Q  251 tctttacaaaagctgaagattagtgattgcaacaagttggaggcatc 297  Q
    |||||||| || ||| ||||||| ||||||||||||||||| |||||    
T  6781515 tctttacagaaactggagattagagattgcaacaagttggaagcatc 6781561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 6840789 - 6840904
Alignment:
Q  175 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagt 274  Q
    ||||||||||||||||||| || |||||    ||||| || |||| ||||||||    ||||||||||||||||||||||||||||| ||  ||||| |     
T  6840789 gtttcctttgcttaaagagatttctatatccgattgtcccgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaatctagagatttgg 6840885  T
Q  275 gattgcaacaagttggagg 293  Q
    |||||||||||||||||||    
T  6840886 gattgcaacaagttggagg 6840904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 294
Target Start/End: Original strand, 6592810 - 6592948
Alignment:
Q  153 aggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttc 252  Q
    |||||||||| |||| |||||| || ||||||||| ||||||||  ||||| | ||||| |||| || ||||| |||   ||||||||||||||||||||    
T  6592810 aggaatggttatgtcttgaaggtttccctttgcttcaagagctttgtataaaacattgtcccaagttgaaaagagcc---ctgcctcaacaccttccttc 6592906  T
Q  253 tttacaaaagctgaagattagtgattgcaacaagttggaggc 294  Q
    ||| |||||  || |||||| ||||||| |  ||||||||||    
T  6592907 tttgcaaaaattggagattactgattgccaagagttggaggc 6592948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 4390320 - 4390432
Alignment:
Q  99 atgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttac 198  Q
    ||||||| ||||||| ||||||| |||||  ||||||||  |||  ||||||| |||||||||| |||  |||||| || |||||||||||||||||| |    
T  4390320 atgttccattcaggttccttgaaattttgcgatttgaggacatgtccaattggaaggaatggttatgtgttgaaggtttccctttgcttaaagagctttc 4390419  T
Q  199 tataagaaattgt 211  Q
    |||| | ||||||    
T  4390420 tatacgtaattgt 4390432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 6556200 - 6556283
Alignment:
Q  175 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
    ||||||||||||||||| | || ||||||||||||||  | |||| ||||||||    |||||||||||||||||||||||||||||    
T  6556200 gtttcctttgcttaaagtgttttctataagaaattgtctcgaattgaaaagggct---ctgcctcaacaccttccttctttacaaaa 6556283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 293
Target Start/End: Original strand, 6781093 - 6781278
Alignment:
Q  102 ttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactat 201  Q
    |||| |||| ||||||||||  ||||| ||||||||  |||  ||| |||||||||||| | |||   | | ||||||||||||||| ||||||| ||||    
T  6781093 ttccattcaagtcccttgaatatttgagatttgaggatatggtcaactgggaggaatggatatgt---gtaaggtttcctttgcttatagagctttctat 6781189  T
Q  202 aagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggagg 293  Q
    || ||||||| | ||| | ||| |  ||   ||||||||||| |||||||||||||||||  |||| ||||||| ||||||  |||||||||    
T  6781190 aacaaattgtcctaaactgaaaggcacc---ctgcctcaacatcttccttctttacaaaaattgaatattagtggttgcaaagagttggagg 6781278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 6521808 - 6521868
Alignment:
Q  233 ctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggagg 293  Q
    |||| |||||||||||||||||||||||| ||| ||||| |  ||||||||||||||||||    
T  6521808 ctgcatcaacaccttccttctttacaaaaactggagattcggaattgcaacaagttggagg 6521868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 6522483 - 6522543
Alignment:
Q  233 ctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggagg 293  Q
    |||| |||||||||||||||||||||||| ||| ||||| |  ||||||||||||||||||    
T  6522483 ctgcatcaacaccttccttctttacaaaaactggagattcggaattgcaacaagttggagg 6522543  T

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Target: chr3; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 6522753 - 6522813
Alignment:
Q  233 ctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggagg 293  Q
    |||| |||||||||||||||||||||||| ||| ||||| |  ||||||||||||||||||    
T  6522753 ctgcatcaacaccttccttctttacaaaaactggagattcggaattgcaacaagttggagg 6522813  T

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Target: chr3; HSP #41
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 6556065 - 6556148
Alignment:
Q  175 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
    ||||||||||||||||||| ||   |||||||||||| || |||| ||||||||    || ||||||||||||||||||||||||||    
T  6556065 gtttcctttgcttaaagagtttttaataagaaattgtcccgaattgaaaagggc---tcttcctcaacaccttccttctttacaaaa 6556148  T

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Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 6734389 - 6734315
Alignment:
Q  151 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaag 225  Q
    |||||||||||| |||| ||||||||||| ||  ||||||||||||  ||||||  ||||||||||||| |||||    
T  6734389 ggaggaatggttatgtcttgaagggtttctttctcttaaagagctttatataagtcattgttccaaattcaaaag 6734315  T

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Target: chr3; HSP #43
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 6781274 - 6781348
Alignment:
Q  151 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaag 225  Q
    |||||||||||| |||| ||||||||||| ||  ||||||||||||  ||||||  ||||||||||||| |||||    
T  6781274 ggaggaatggttatgtcttgaagggtttctttctcttaaagagctttatataagtcattgttccaaattcaaaag 6781348  T

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Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 5297240 - 5297179
Alignment:
Q  233 ctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggaggc 294  Q
    ||||||||||| ||||||||||| |||||  ||||||||||||||||| |  ||||||||||    
T  5297240 ctgcctcaacatcttccttctttgcaaaaattgaagattagtgattgccaagagttggaggc 5297179  T

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Target: chr3; HSP #45
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 280
Target Start/End: Complemental strand, 6915673 - 6915549
Alignment:
Q  153 aggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttc 252  Q
    |||||||||| |||| |||| | || ||||||||| ||||||||  ||||| | ||||| |||| || |||||  ||   ||||||||||||||||||||    
T  6915673 aggaatggttatgtcttgaatgtttccctttgcttcaagagctttgtataaaacattgtcccaagttgaaaagttcc---ctgcctcaacaccttccttc 6915577  T
Q  253 tttacaaaagctgaagattagtgattgc 280  Q
    ||| |||||  || |||||| |||||||    
T  6915576 tttgcaaaaattggagattattgattgc 6915549  T

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Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 6898583 - 6898536
Alignment:
Q  233 ctgcctcaacaccttccttctttacaaaagctgaagattagtgattgc 280  Q
    ||||||||||||||||||||||| |||||| |||| |||| |||||||    
T  6898583 ctgcctcaacaccttccttctttgcaaaagttgaaaattattgattgc 6898536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 280
Target Start/End: Original strand, 6723536 - 6723660
Alignment:
Q  153 aggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttc 252  Q
    |||||||||| |||| |||||| || ||||||||  ||||||||  ||||| | ||||| |||| || |||||  ||   ||||||||||||||||||||    
T  6723536 aggaatggttatgtcttgaaggtttccctttgctacaagagctttgtataaaacattgtcccaagttgaaaagttcc---ctgcctcaacaccttccttc 6723632  T
Q  253 tttacaaaagctgaagattagtgattgc 280  Q
     || |||||  || |||||| |||||||    
T  6723633 attgcaaaaattggagattattgattgc 6723660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 280
Target Start/End: Complemental strand, 6881088 - 6880964
Alignment:
Q  153 aggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttc 252  Q
    |||||||||| |||| |||||| || ||||||||| || |||||  ||||| | ||||| |||| || ||||| |||   || ||||||||||| |||||    
T  6881088 aggaatggttatgtcttgaaggtttccctttgcttcaaaagctttgtataaaacattgtcccaagttgaaaagtgcc---cttcctcaacacctcccttc 6880992  T
Q  253 tttacaaaagctgaagattagtgattgc 280  Q
    ||| |||||  || |||||| |||||||    
T  6880991 tttgcaaaaattggagattattgattgc 6880964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 5248723 - 5248683
Alignment:
Q  179 cctttgcttaaagagcttactataagaaattgttccaaatt 219  Q
    |||||||||||| ||||| |||||||||||||| |||||||    
T  5248723 cctttgcttaaacagctttctataagaaattgtcccaaatt 5248683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 6840516 - 6840599
Alignment:
Q  175 gtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
    ||||||||||||||||||| ||  ||||    ||||| ||||||| ||||||||    ||||| |||||||||||||||||||||||    
T  6840516 gtttcctttgcttaaagagatttatatattcgattgtcccaaattgaaaagggct---ctgccacaacaccttccttctttacaaaa 6840599  T

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Target: scaffold1643 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 99 - 297
Target Start/End: Complemental strand, 796 - 598
Alignment:
Q  99 atgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttac 198  Q
    |||||||||||  ||||||||||||||||| |||||||  | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  796 atgttccgttcttgtcccttgaagttttgaaatttgagaagttgaacaattgggaggaatggttgtgtcctgaagggtttcctttgcttaaagagcttac 697  T
Q  199 tataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaagctgaagattagtgattgcaacaagttggaggcatc 297  Q
    ||||||||| ||| |||||||| ||||||||   ||||||||||||||||||| ||||||||| ||||| |||| ||||||||||||| ||||||||||    
T  696 tataagaaagtgtcccaaattagaaagggccactctgcctcaacaccttccttttttacaaaaactgaatattactgattgcaacaagatggaggcatc 598  T

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Target: scaffold0958 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 1171 - 1357
Alignment:
Q  72 aagagttttacggcaatagttcaacaaatgttccgttcaggtcc-cttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcctg 170  Q
    |||||||||| || |||| |||||||| | |||||||||||| | ||||||||||||  ||||||| |||||      ||||| ||||||| ||||| ||    
T  1171 aagagttttatggaaataattcaacaattattccgttcaggttctcttgaagttttggaatttgagtggatgctttgctgggaagaatggtattgtcttg 1270  T
Q  171 aagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaa 260  Q
    |||||||||||||||||||| | ||| |||||||| |||||  || ||| |||||||||   || |||| ||||||||||||||||||||    
T  1271 aagggtttcctttgcttaaaaatctttctataagatattgtcgcatattgaaaagggcc---ctacctcgacaccttccttctttacaaa 1357  T

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Target: scaffold0425 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 70 - 261
Target Start/End: Original strand, 8876 - 9061
Alignment:
Q  70 tgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggttttgtcct 169  Q
    |||||| ||||| ||||||| |||||||| |||||| |||| ||||||||||  ||||| ||||| ||  |||  ||| |||||||||||| | ||   |    
T  8876 tgaagaattttatggcaataattcaacaattgttccattcaagtcccttgaatatttgagatttgtggatatggtcaactgggaggaatggatatg---t 8972  T
Q  170 gaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaaa 261  Q
    | | |||||||| ||||||||||||||  ||||  ||||||| | ||||| |||||  ||   ||||||||||| |||||||||||||||||    
T  8973 gtaaggtttcctctgcttaaagagctttatatagaaaattgtcctaaattgaaaagcacc---ctgcctcaacatcttccttctttacaaaa 9061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 297
Target Start/End: Original strand, 9224 - 9367
Alignment:
Q  151 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 250  Q
    |||||||||||| || | || || ||||||||||||||| ||| || |||||   |||||| || |||| ||||||||    ||||| ||||||||||||    
T  9224 ggaggaatggttatgccttggagagtttcctttgcttaacgagttttctatatccaattgtcccgaattgaaaagggct---ctgccacaacaccttcct 9320  T
Q  251 tctttacaaaagctgaagattagtgattgcaacaagttggaggcatc 297  Q
    |||||||||||  ||   |||| |||||||||||||||||| |||||    
T  9321 tctttacaaaaattgttcattaatgattgcaacaagttggaagcatc 9367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 257
Target Start/End: Original strand, 9089 - 9192
Alignment:
Q  151 ggaggaatggttttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttcct 250  Q
    |||||||||||| |||| ||||||||||| ||  |||||||||||| ||||| |  ||||||| ||||| |||||||   |  |||||||||| ||||||    
T  9089 ggaggaatggttatgtcttgaagggtttctttctcttaaagagctttctatatggtattgttctaaattcaaaaggg---tattgcctcaacatcttcct 9185  T
Q  251 tctttac 257  Q
    |||||||    
T  9186 tctttac 9192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 260
Target Start/End: Original strand, 6574695 - 6574890
Alignment:
Q  62 atcataggtgaagagttttacggcaatagttcaacaaatgttccgttcaggtcccttgaagttttgatatttgaggggatgaacaattgggaggaatggt 161  Q
    ||||| ||||||||||| |||||| || ||||||||   ||||||||||||||||||||| |||||  ||||| |   |||  | | ||| |||||||||    
T  6574695 atcatcggtgaagagttctacggcgattgttcaacattagttccgttcaggtcccttgaatttttggaatttgggaatatgcccgaatggaaggaatggt 6574794  T
Q  162 tttgtcctgaagggtttcctttgcttaaagagcttactataagaaattgttccaaattaaaaagggccttgctgcctcaacaccttccttctttacaaa 260  Q
    |||  | |||| ||||||| ||||| |||||||||  ||||    ||||| ||||||| ||||||   || ||||||||| |||||| |||||| ||||    
T  6574795 tttaacttgaacggtttcccttgctcaaagagctttatatagaccattgtcccaaattgaaaagg---ttcctgcctcaaaaccttctttctttgcaaa 6574890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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