View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_27 (Length: 435)
Name: NF1297_low_27
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 176 - 427
Target Start/End: Original strand, 5232064 - 5232310
Alignment:
| Q |
176 |
ataaagcagagcagttaccgtgaatacttgaagctgaaacaaagatttgaaaatcttcaaagagcacagaggtaaagaattttacattaaattttcatat |
275 |
Q |
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| T |
5232064 |
ataaagcagagcagttaccgtgaatacttgaagctgaaacaaagatttgaaaatcttcaaagagcacagaggtaaagatttttacattaa-ttttcatat |
5232162 |
T |
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| Q |
276 |
tttctatagtgaaatatttgccaatatatcgacactattaattgtgtgtgtatgtatgtgtctccaatatttcagaaatcttttaggtgaagatttgggt |
375 |
Q |
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| T |
5232163 |
tttttatagtgaaatatttgccaatatatcgacactattaattgtgtgtgta----tgtgtctccaatatttcagaaatcttttaggtgaagatttgggt |
5232258 |
T |
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| Q |
376 |
ccactaagttctaaggatcttgagcagcttgaaaggcaattggattcatctc |
427 |
Q |
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| T |
5232259 |
ccactaagttctaaggatcttgagcagcttgaaaggcaattggattcatctc |
5232310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 5231918 - 5231982
Alignment:
| Q |
30 |
gaataaggtcggaatacgttgtatgatgtcaacttctaatgtataaaaaacatttctgatttata |
94 |
Q |
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| T |
5231918 |
gaataaggtcagaatacgttgtctgatgtcaacttctaatgtataaaaaatatttctgatttata |
5231982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 5655796 - 5655853
Alignment:
| Q |
180 |
agcagagcagttaccgtgaatacttgaagctgaaacaaagatttgaaaatcttcaaag |
237 |
Q |
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| T |
5655796 |
agcagagcagttaccgtgagtacttgaagctgaaagcaagatttgaatctcttcaaag |
5655853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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