View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_33 (Length: 412)
Name: NF1297_low_33
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_33 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 174 - 397
Target Start/End: Complemental strand, 6098378 - 6098153
Alignment:
| Q |
174 |
tgaaccaaggattgaatctcgactatgagagattcttgtattttatgtttgattcgccacaaattagattatagataaaatttgtagaaaattgtacaaa |
273 |
Q |
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| T |
6098378 |
tgaatcaaggattgaatttcgactatgagagatcctcatattttatgtttgatacgccagaaataagattatagagaaaatttgtagaaaattgtacaaa |
6098279 |
T |
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| Q |
274 |
atttcaattttgtagtgtcttgaacctcttaatttatctt--ttttatctctctatctttttgtgcccaaaaaagctatgataataacttttttctgtgt |
371 |
Q |
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| T |
6098278 |
atttcaattttgtagtgtcttgaacctcttaatttatctttattttatctctctatctttttgtgcccaaaaaagtcatgataataactttttcgtgtgt |
6098179 |
T |
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| Q |
372 |
aatgggattgttaattactccttgat |
397 |
Q |
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| T |
6098178 |
aacgggattgttaattactcattgat |
6098153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 6936215 - 6936162
Alignment:
| Q |
338 |
ccaaaaaagctatgataataacttttttctgtgtaatgggattgttaattactc |
391 |
Q |
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| T |
6936215 |
ccaaaaaagccatgataataacttttttctgtgtaacgggattgttaattactc |
6936162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 17282 - 17229
Alignment:
| Q |
338 |
ccaaaaaagctatgataataacttttttctgtgtaatgggattgttaattactc |
391 |
Q |
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| T |
17282 |
ccaaaaaagccatgataataacttttttctgtgtaacgggattgttaattactc |
17229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 512276 - 512223
Alignment:
| Q |
338 |
ccaaaaaagctatgataataacttttttctgtgtaatgggattgttaattactc |
391 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
512276 |
ccaaaaaagccatgataataacttttttctgtgtaacgggattgttaattactc |
512223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 18085661 - 18085714
Alignment:
| Q |
338 |
ccaaaaaagctatgataataacttttttctgtgtaatgggattgttaattactc |
391 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18085661 |
ccaaaaaagccatgataataacttttttctgtgtaacgggattgttaattactc |
18085714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 40479343 - 40479290
Alignment:
| Q |
338 |
ccaaaaaagctatgataataacttttttctgtgtaatgggattgttaattactc |
391 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40479343 |
ccaaaaaagccatgataataacttttttctgtgtaacgggattgttaattactc |
40479290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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