View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_35 (Length: 402)
Name: NF1297_low_35
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 394
Target Start/End: Original strand, 1496356 - 1496727
Alignment:
| Q |
30 |
ggttttagatggcttatttgaggttg-------gaactaaaagtttaggaattcactagggagacaacacacgaactcttaacatcgattagagacaact |
122 |
Q |
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| T |
1496356 |
ggttttagatggcttatttgaggttggaagttggaactaaaagtttaggaattcactagggagacaacacacgaactcttaacatcgattagagacaact |
1496455 |
T |
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| Q |
123 |
cttttggcacatttaaagtctcatattatttcagaatcaaggcaaaaggatggtctattgtctatatacaatatccacactcaacccaacgaaatatcca |
222 |
Q |
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| T |
1496456 |
cttttggcacatttaaagtctcatattatttgagaatcaaggcaaaaggatggtctattgtctatatacaatatccacactcaacccaacgaaatatcca |
1496555 |
T |
|
| Q |
223 |
tcaaagtccaatatattgaaagctttccataaatgtcaaaattgttttagtcaaacaacgtcgatgttaagctaccgtccaattaatatcaaccatgtcc |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1496556 |
tcaaagtccaatatattgaaagctttccataaatgtcaaaagtgttttagtcaaacaacgtcgatgttaagctaccgtccaattaatatcaaccatgtcc |
1496655 |
T |
|
| Q |
323 |
ctttccacgatcgagttcaaattgcactactataaaaacacatacaaactactacgtaccaccatattattc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1496656 |
ctttccacgatcgagttcaaattgcactactataaatacacatacaaactactacgtaccaccatattattc |
1496727 |
T |
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