View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_low_38 (Length: 380)

Name: NF1297_low_38
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_low_38
NF1297_low_38
[»] chr5 (6 HSPs)
chr5 (8-350)||(41571017-41571359)
chr5 (158-347)||(34239714-34239903)
chr5 (196-346)||(34232000-34232150)
chr5 (194-347)||(42129632-42129785)
chr5 (194-346)||(41712744-41712896)
chr5 (190-305)||(41432337-41432452)
[»] chr3 (1 HSPs)
chr3 (122-323)||(8523811-8524012)
[»] chr8 (1 HSPs)
chr8 (65-210)||(30019839-30019982)
[»] chr2 (1 HSPs)
chr2 (196-347)||(12249231-12249382)
[»] chr6 (1 HSPs)
chr6 (182-312)||(25522203-25522333)
[»] chr4 (1 HSPs)
chr4 (262-309)||(11118934-11118981)


Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 41571017 - 41571359
Alignment:
Q  8 ccaacaatataacagggtttcaaaacttaggttatttactattaaataacaatttactaagtggaaaaattccttcatggtgtttatccataccatcttt 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41571017 ccaacaaaataacagggtttcaaaacttaggttatttactattaaataacaatttactaagtggaaaaattccttcatggtgtttatccataccatcttt 41571116  T
Q  108 gacaatgttggatctatcaaataatcagtttactggaaatataagtgcagtctcatcatattctttgtggtatctaaaactatgcagcaacaagctacaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41571117 gacaatgttggatctatcaaataatcagtttactggaaatataagtgcagtctcatcatattctttgtggtatctaaaactatgcagcaacaagctacaa 41571216  T
Q  208 ggcgatattcctgaatctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtggtattgtcaattttaaacacttttcca 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41571217 ggcgatattcctgaatctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtggtattgtcaattttaaatacttttcca 41571316  T
Q  308 aacttcaaaatttgaattctctgtccctttcacataatagtca 350  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41571317 aacttcaaaatttgaattctctgtccctttcacataatagtca 41571359  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 158 - 347
Target Start/End: Original strand, 34239714 - 34239903
Alignment:
Q  158 tctcatcatattctttgtggtatctaaaactatgcagcaacaagctacaaggcgatattcctgaatctattttcaaccttgtaaacctaactacactatg 257  Q
    ||||||||||||| ||   |||||||   ||||||| ||||||||||||||| ||||||||  | || ||||||||||||| |||||||| |||||||||    
T  34239714 tctcatcatattccttagagtatctatctctatgcaacaacaagctacaaggtgatattccaaattcaattttcaaccttgcaaacctaattacactatg 34239813  T
Q  258 cctgtcatcaaacaacttgagtggtattgtcaattttaaacacttttccaaacttcaaaatttgaattctctgtccctttcacataatag 347  Q
     || ||||||||||||||||||||| ||||||||||| || ||||| | ||||||||||| ||| |||||||||||||||||||||||||    
T  34239814 tctatcatcaaacaacttgagtggtgttgtcaattttcaagactttacaaaacttcaaaaattggattctctgtccctttcacataatag 34239903  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 196 - 346
Target Start/End: Original strand, 34232000 - 34232150
Alignment:
Q  196 aacaagctacaaggcgatattcctgaatctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtggtattgtcaatttta 295  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||||  || ||  | ||   || ||||||||||||||||||||| |||||||||||     
T  34232000 aacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaattttc 34232099  T
Q  296 aacacttttccaaacttcaaaatttgaattctctgtccctttcacataata 346  Q
    ||||||||  |||||||||||||||| ||||| ||||||||||||| ||||    
T  34232100 aacactttggcaaacttcaaaatttgtattctttgtccctttcacagaata 34232150  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 194 - 347
Target Start/End: Complemental strand, 42129785 - 42129632
Alignment:
Q  194 gcaacaagctacaaggcgatattcctgaatctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtggtattgtcaattt 293  Q
    ||||||||||||||||| |||||||  |||||||||||||||||| |||| |||||   |||   || ||||||||||||||||||| | || |  ||||    
T  42129785 gcaacaagctacaaggcaatattccaaaatctattttcaaccttgcaaacttaactttgctagatctatcatcaaacaacttgagtgatgttattgattt 42129686  T
Q  294 taaacacttttccaaacttcaaaatttgaattctctgtccctttcacataatag 347  Q
    | |||||||||||||||||||| |||||||  ||||||| ||||||||||||||    
T  42129685 tcaacacttttccaaacttcaatatttgaaaactctgtcactttcacataatag 42129632  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 346
Target Start/End: Original strand, 41712744 - 41712896
Alignment:
Q  194 gcaacaagctacaaggcgatattcctgaatctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtggtattgtcaattt 293  Q
    ||||||| ||| ||||| ||||||| ||||| |||||||| ||| |||||||||||| ||||  ||| |||||||||||||| |||||| ||||  ||||    
T  41712744 gcaacaaactagaaggcaatattccagaatcaattttcaaacttataaacctaactagactagacctatcatcaaacaacttcagtggtgttgttgattt 41712843  T
Q  294 taaacacttttccaaacttcaaaatttgaattctctgtccctttcacataata 346  Q
    | || |||| ||| ||||||||||| |    |||||||||||||||| |||||    
T  41712844 tcaatacttctccgaacttcaaaatctagtatctctgtccctttcacttaata 41712896  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 305
Target Start/End: Complemental strand, 41432452 - 41432337
Alignment:
Q  190 tgcagcaacaagctacaaggcgatattcctgaatctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtggtattgtca 289  Q
    |||| ||||| | |||||||  ||||||| |||||  ||||||||||||||||||| ||||   | || || || ||||| |||||||||||| ||||||    
T  41432452 tgcaacaacatgttacaaggaaatattccagaatcacttttcaaccttgtaaaccttactaacttgtgtctatcttcaaataacttgagtggttttgtca 41432353  T
Q  290 attttaaacacttttc 305  Q
    ||||||||| ||||||    
T  41432352 attttaaactcttttc 41432337  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 122 - 323
Target Start/End: Complemental strand, 8524012 - 8523811
Alignment:
Q  122 tatcaaataatcagtttactggaaatataagtgcagtctcatcatattctttgtggtatctaaaactatgcagcaacaagctacaaggcgatattcctga 221  Q
    |||||||||||||  |||| || ||||| || ||| ||||||||||||| ||   || ||||   ||| | | ||||| |||||||||| ||||||| ||    
T  8524012 tatcaaataatcaacttacagggaatatcagcgcaatctcatcatattccttagagtttctatctctaagtaacaacaggctacaaggcaatattccaga 8523913  T
Q  222 atctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtggtattgtcaattttaaacacttttccaaacttcaaaatttg 321  Q
    ||| ||||||||||||| |||||||| || ||||   || ||||||||||||||||||||| ||||||||||  || || ||||||| |||||| |||||    
T  8523912 atccattttcaaccttgcaaacctaagtagactagatctatcatcaaacaacttgagtggtgttgtcaatttccaaaacatttccaaccttcaacatttg 8523813  T
Q  322 aa 323  Q
    ||    
T  8523812 aa 8523811  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 210
Target Start/End: Complemental strand, 30019982 - 30019839
Alignment:
Q  65 taagtggaaaaattccttcatggtgtttatccataccatctttgacaatgttggatctatcaaataatcagtttactggaaatataagtgcagtctcatc 164  Q
    |||||||||||||| ||||||| |||||||   |||||||| ||||||  ||||||||||||||  || | |||||  |||||| ||||||| |||||||    
T  30019982 taagtggaaaaatttcttcatgatgtttatatttaccatctatgacaagattggatctatcaaa--ataaatttacaagaaatagaagtgcaatctcatc 30019885  T
Q  165 atattctttgtggtatctaaaactatgcagcaacaagctacaaggc 210  Q
    || ||||||||| | ||||||||| ||||||||  |||||||||||    
T  30019884 atgttctttgtgatttctaaaactttgcagcaatgagctacaaggc 30019839  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 347
Target Start/End: Complemental strand, 12249382 - 12249231
Alignment:
Q  196 aacaagctacaaggcgatattcctgaatctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtggtattgtcaatttta 295  Q
    ||||||||||||||| |||||||  |||| ||||||||||||  || |||||||| ||||    | ||||||||||||||||||||| ||||  |||||     
T  12249382 aacaagctacaaggcaatattccaaaatccattttcaaccttacaaccctaactagactagatttatcatcaaacaacttgagtggtgttgttgattttc 12249283  T
Q  296 aacacttttccaaacttcaaaatttgaattctctgtccctttcacataatag 347  Q
    ||| |||||||||||||||    |||  || |||||||||||||||||||||    
T  12249282 aactcttttccaaacttcattggttgttttttctgtccctttcacataatag 12249231  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 312
Target Start/End: Original strand, 25522203 - 25522333
Alignment:
Q  182 taaaactatgcagcaacaagctacaaggcgatattcctgaatctattttcaaccttgtaaacctaactacactatgcctgtcatcaaacaacttgagtgg 281  Q
    |||| |||| || |||||||||||||||| ||||||| ||||| |||||||| |||  |||||||||||  |||   || || | |||| ||||||||||    
T  25522203 taaatctatacaacaacaagctacaaggcaatattccagaatccattttcaatcttacaaacctaactaatctaattctatctttaaacgacttgagtgg 25522302  T
Q  282 tattgtcaattttaaacacttttccaaactt 312  Q
    | ||||||||||| |||||||||||||||||    
T  25522303 ttttgtcaattttcaacacttttccaaactt 25522333  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 11118981 - 11118934
Alignment:
Q  262 tcatcaaacaacttgagtggtattgtcaattttaaacacttttccaaa 309  Q
    ||||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  11118981 tcatcaaacaacttgagtggtgttgtcaattttaaactcttctccaaa 11118934  T

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