View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_40 (Length: 378)
Name: NF1297_low_40
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 51377024 - 51376763
Alignment:
| Q |
13 |
aatatacaacttccaagttctttttacctatttgctcaatggaaaaacggtgtgcacttgctcatttacgtattcatagttttattgaatcacaggcaag |
112 |
Q |
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| T |
51377024 |
aatatacaacttccaagttctttttacctatttgctcaatggaaaaacg-tgtgcacttgctcatttacgtattcatagttttattgaatcacaggcaag |
51376926 |
T |
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| Q |
113 |
tggaacaaggataatagaaaagggaaaagaaaatgagtgggtacgaaggagaaagaattttggtgtaaaaccctaaaaatagatatgggcaaagcatgag |
212 |
Q |
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| T |
51376925 |
tggaacaaggataatagaaaagggaaaagaaaatgagtgggtacgaaggagaaagaattttggtgtaaaaccctaaaaatagatatgggcaaagcatgag |
51376826 |
T |
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| Q |
213 |
catgctgggagtgacaaagaccactcactgtatattccttcgagaaaaacatagtgtagtgtg |
275 |
Q |
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| T |
51376825 |
catgctggaagtgacaaagaccactcactgtatattccttcgagaaaaacatagtgtagtgtg |
51376763 |
T |
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