View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1297_low_46 (Length: 365)
Name: NF1297_low_46
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_46 |
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| [»] scaffold0281 (2 HSPs) |
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| [»] scaffold0214 (2 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 57 - 270
Target Start/End: Original strand, 31861042 - 31861255
Alignment:
| Q |
57 |
ttattcttcaattgtttgtttctattttatgcttatcttttcttatcattattttcctttgaaatttgaatttctatttgtgagccttcttatgtcatga |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31861042 |
ttattcttcaattgtttgtttctattttatgcttatctattcttatcattattttcctttgaaatttgaatttctatttgtgagccttcttatgtcatga |
31861141 |
T |
|
| Q |
157 |
gggttaattgttgctgattataatacttcttgatcggactcttgaattgtcatcagtaaactttggagcaaatgaattaggtaaggccaatgagaaatga |
256 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31861142 |
gggttaattgttactgattataatacttcttgatcagactcttgaattgttatcagtaaactttggagcaaatgaattaggtaaggccaatgggaaatga |
31861241 |
T |
|
| Q |
257 |
tccaaatggattgt |
270 |
Q |
| |
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|||||| ||||||| |
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| T |
31861242 |
tccaaacggattgt |
31861255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 31860955 - 31861042
Alignment:
| Q |
57 |
ttattcttcaattgtttgtttctattttatgcttatcttttcttatcattattttcctttgaaatttgaatttctatttgtgagcctt |
144 |
Q |
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||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
31860955 |
ttattattctatttttggtttctattttatgcttatcttttcttatcattattttcctttgaaacttgaatttgtatttgtgagcctt |
31861042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 25419734 - 25419689
Alignment:
| Q |
57 |
ttattcttcaattgtttgtttctattttatgcttatcttttcttat |
102 |
Q |
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||||||||| |||||||||||||||||||||| ||| ||||||||| |
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| T |
25419734 |
ttattcttccattgtttgtttctattttatgcatatattttcttat |
25419689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 57 - 270
Target Start/End: Original strand, 10525 - 10738
Alignment:
| Q |
57 |
ttattcttcaattgtttgtttctattttatgcttatcttttcttatcattattttcctttgaaatttgaatttctatttgtgagccttcttatgtcatga |
156 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10525 |
ttattcttcaattgtttgtttctattttatgcttatctattcttatcattatattcctttgaaatttgaatttctatttgtgagccttcttatgtcatga |
10624 |
T |
|
| Q |
157 |
gggttaattgttgctgattataatacttcttgatcggactcttgaattgtcatcagtaaactttggagcaaatgaattaggtaaggccaatgagaaatga |
256 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10625 |
gggttaattgttactgattataatacttcttgatcagactcttgaattgttatcagtaaactttggagcaaatgaattaggtaaggccaatgggaaatga |
10724 |
T |
|
| Q |
257 |
tccaaatggattgt |
270 |
Q |
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|||||| ||||||| |
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| T |
10725 |
tccaaacggattgt |
10738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 10438 - 10525
Alignment:
| Q |
57 |
ttattcttcaattgtttgtttctattttatgcttatcttttcttatcattattttcctttgaaatttgaatttctatttgtgagcctt |
144 |
Q |
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||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
10438 |
ttattattctatttttggtttctattttatgcttatcttttcttatcattattttcctttgaaacttgaatttgtatttatgagcctt |
10525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 99 - 270
Target Start/End: Complemental strand, 28680457 - 28680286
Alignment:
| Q |
99 |
ttatcattattttcctttgaaatttgaatttctatttgtgagccttcttatgtcatgagggttaattgttgctgattataatacttcttgatcggactct |
198 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||| |
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| T |
28680457 |
ttatcattattttcctttgaaatttgaatttctatttgtgagccttcttatgtcatgagggttaatcgttactgattataatatttcttgatcgaactct |
28680358 |
T |
|
| Q |
199 |
tgaattgtcatcagtaaactttggagcaaatgaattaggtaaggccaatgagaaatgatccaaatggattgt |
270 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28680357 |
tgaactgttatcagtaaactttggagcaaatgaattaggtaaggccaatggaaaatgatccaaatggattgt |
28680286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 28680507 - 28680456
Alignment:
| Q |
71 |
tttgtttctattttatgcttatcttttcttatcattattttcctttgaaatt |
122 |
Q |
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|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
28680507 |
tttgtttctattttatacttattttttcttatcattattttcctttgaaatt |
28680456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 4094 - 4049
Alignment:
| Q |
57 |
ttattcttcaattgtttgtttctattttatgcttatcttttcttat |
102 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4094 |
ttattcttccattgtttgtttctattttatgcttatcttttcttat |
4049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 24259 - 24214
Alignment:
| Q |
57 |
ttattcttcaattgtttgtttctattttatgcttatcttttcttat |
102 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
24259 |
ttattcttccattgtttgtttctattttatgcttatcttttcttat |
24214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 7664163 - 7664063
Alignment:
| Q |
76 |
ttctattttatgcttatcttttcttatcattattttcctttgaaatttgaatttctatttgtgagccttcttatgtcatgagggttaattgttgctgatt |
175 |
Q |
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|||||||| |||||||| ||||||||||||| ||||| ||||||| || || || |||||||||||||| ||||| || |||||||| ||||| ||| || |
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|
| T |
7664163 |
ttctatttcatgcttatattttcttatcatttttttc-tttgaaacttcaaattgtatttgtgagcctttttatgccaagagggttatttgttactgttt |
7664065 |
T |
|
| Q |
176 |
at |
177 |
Q |
| |
|
|| |
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|
| T |
7664064 |
at |
7664063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 29918 - 29963
Alignment:
| Q |
57 |
ttattcttcaattgtttgtttctattttatgcttatcttttcttat |
102 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
29918 |
ttattcttccattgtttgtttctattttatacttatcttttcttat |
29963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 30893209 - 30893253
Alignment:
| Q |
58 |
tattcttcaattgtttgtttctattttatgcttatcttttcttat |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
30893209 |
tattcttccattgtttgtttctattttatgcttattttttcttat |
30893253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 177
Target Start/End: Original strand, 22929993 - 22930093
Alignment:
| Q |
76 |
ttctattttatgcttatcttttcttatcattattttcctttgaaatttgaatttctatttgtgagcc-ttcttatgtcatgagggttaattgttgctgat |
174 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |||| |||||||| || || || |||||||||||| || |||||||| |||||||| ||||| ||| | |
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|
| T |
22929993 |
ttctatttcatgcttatattttcttatcatt-tttttctttgaaacttcaaatt-tatttgtgagccttttttatgtcaagagggttatttgttactgtt |
22930090 |
T |
|
| Q |
175 |
tat |
177 |
Q |
| |
|
||| |
|
|
| T |
22930091 |
tat |
22930093 |
T |
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