View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_low_52 (Length: 345)

Name: NF1297_low_52
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_low_52
NF1297_low_52
[»] chr5 (1 HSPs)
chr5 (9-293)||(43572247-43572531)
[»] chr7 (1 HSPs)
chr7 (9-151)||(48429176-48429321)
[»] chr2 (2 HSPs)
chr2 (9-143)||(29492938-29493074)
chr2 (175-287)||(4522788-4522899)
[»] chr6 (1 HSPs)
chr6 (56-151)||(20867357-20867451)
[»] chr3 (3 HSPs)
chr3 (14-152)||(7701818-7701959)
chr3 (63-151)||(11013574-11013662)
chr3 (84-135)||(33720621-33720672)
[»] chr1 (3 HSPs)
chr1 (9-151)||(6854540-6854687)
chr1 (84-148)||(52976008-52976072)
chr1 (84-143)||(52681769-52681828)
[»] chr4 (3 HSPs)
chr4 (9-133)||(56518476-56518604)
chr4 (110-154)||(25244756-25244800)
chr4 (109-149)||(13417413-13417453)
[»] chr8 (1 HSPs)
chr8 (84-143)||(36073942-36074001)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 43572531 - 43572247
Alignment:
Q  9 gaataatatgtctacctttgtgaactctaatcaaaagactgcagatatttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgg 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43572531 gaatcatatgtctacctttgtgaactctaatcaaaagactgcagatatttaagcaaaagtttggaaagacccatctttgagcatttgataagcaagatgg 43572432  T
Q  109 gcatgatagatatctatgcaccaacttgagaggggtgttggaatgtgtacctgtgtgtgtgttttctttctagaaggatccacatgattcttttggtcaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43572431 gcatgatagatatctatgcaccaacttgagaggggtgttggaatgtgtacctgtgtgtgtgttttctttctagaaggatccacatgattcttttggtcaa 43572332  T
Q  209 tacattaactttctatttattgttcatttattcttattccctaaaattctcattgtgaattattatcacttattgtaatcctcac 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43572331 tacattaactttctatttattgttcatttattcttattccctaaaattctcattgtgaattattatcacttattgtaatcctcac 43572247  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 48429176 - 48429321
Alignment:
Q  9 gaataatatgtctaccttt-gtgaactctaatcaaaagactgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagat 106  Q
    ||||||||||||||||||| || |  || | |||| | ||||||||||| || | |||||| ||||||||||||| ||||||||||||||||  |||| |    
T  48429176 gaataatatgtctaccttttgttacttcgagtcaacaaactgcagatatcttgaccaaaagcttggcaagacccacctttgagcatttgatagacaagtt 48429275  T
Q  107 gggcatgatagatatctatgcaccaacttga-gaggggtgttggaa 151  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||    
T  48429276 gggcatgatagatatctatgcaccaacttgagggggggtgttggaa 48429321  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 29493074 - 29492938
Alignment:
Q  9 gaataatatgtctaccttt-gtgaactctaatcaaaagactgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagat 106  Q
    ||||||||||||||||||| || |  || | |||| | ||||||||||| || | |||||| ||||||||||||| ||||||||||||||||  |||| |    
T  29493074 gaataatatgtctaccttttgttacttcgagtcaacaaactgcagatatcttgaccaaaagcttggcaagacccacctttgagcatttgatagacaagtt 29492975  T
Q  107 gggcatgatagatatctatgcaccaacttgagagggg 143  Q
    |||||||||||||||||||||||||||||||| ||||    
T  29492974 gggcatgatagatatctatgcaccaacttgagggggg 29492938  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 4522899 - 4522788
Alignment:
Q  175 tttctagaaggatccacatgattcttttggtcaatacattaactttctatttattgttcatttattcttattccctaaaattctcattgtgaattattat 274  Q
    ||||||||||||||||||| |||||| | | |||| ||| | ||||||| | ||||| | |||||| ||||| |||||||||||||||| ||||||||||    
T  4522899 tttctagaaggatccacataattcttatagccaatgcat-atctttctactcattgtccctttatttttatttcctaaaattctcattgagaattattat 4522801  T
Q  275 cacttattgtaat 287  Q
    |||||||||||||    
T  4522800 cacttattgtaat 4522788  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 20867357 - 20867451
Alignment:
Q  56 tttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagaggggtgttggaa 151  Q
    ||||| |||||| ||||| |||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||    
T  20867357 tttaaccaaaagcttggcgagacccgtcgttgagcatttgataagcaagttgggcatgatagatatctatgcaccaactt-aggggggtgttggaa 20867451  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 7701818 - 7701959
Alignment:
Q  14 atatgtctaccttt-gtgaactctaatcaaaagactgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagatgggca 111  Q
    |||||||||||||| ||||  | || |||| | ||||| ||||| |||| ||| || |||||||||||  ||||||||||||||||| ||| | ||||||    
T  7701818 atatgtctaccttttgtgacttatagtcaacaaactgctgatatcttaaccaagagcttggcaagacctgtctttgagcatttgataggcatgttgggca 7701917  T
Q  112 tgatagatatctatgcaccaacttga-gaggggtgttggaat 152  Q
    ||||||| |||||||||||||||||| ||||||||| |||||    
T  7701918 tgatagacatctatgcaccaacttgaggaggggtgtcggaat 7701959  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 11013574 - 11013662
Alignment:
Q  63 aaaagtttggcaagacccatctttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagaggggtgttggaa 151  Q
    ||||| |||| |||||| | |||||||||||| |||  |||| |||||||||| ||||||||||||||||||||||  |||||| ||||    
T  11013574 aaaagcttggtaagaccaacctttgagcatttaatagacaagttgggcatgattgatatctatgcaccaacttgaggagggtgtgggaa 11013662  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 33720621 - 33720672
Alignment:
Q  84 tttgagcatttgataagcaagatgggcatgatagatatctatgcaccaactt 135  Q
    ||||||||| | ||||||||| |||||||||| |||||||||||||||||||    
T  33720621 tttgagcatctcataagcaagttgggcatgattgatatctatgcaccaactt 33720672  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 6854687 - 6854540
Alignment:
Q  9 gaataatatgtctaccttt-gtgaactctaatcaaaagactgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagat 106  Q
    ||||||||||||||||||| || |  || | |||| | ||||||||||| || | |||||| ||||||||||||| ||||||||||||||||   ||| |    
T  6854687 gaataatatgtctaccttttgttacttcgagtcaacaaactgcagatatcttgaccaaaagcttggcaagacccacctttgagcatttgatagataagtt 6854588  T
Q  107 gggcatgatag--atatctatgcaccaacttga-gaggggtgttggaa 151  Q
    |||||||||||  |||||||||||||||||||| | ||||||||||||    
T  6854587 gggcatgatagatatatctatgcaccaacttgagggggggtgttggaa 6854540  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 52976072 - 52976008
Alignment:
Q  84 tttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagaggggtgttg 148  Q
    ||||||||| | ||||||||| |||||||||| |||||||||||||||||||||| | |||||||    
T  52976072 tttgagcatgtcataagcaagttgggcatgattgatatctatgcaccaacttgagggaggtgttg 52976008  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 52681828 - 52681769
Alignment:
Q  84 tttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagagggg 143  Q
    ||||||||| | ||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  52681828 tttgagcatctcataagcaagttgggcatgattgatatctatgcaccaacttgagggggg 52681769  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 56518476 - 56518604
Alignment:
Q  9 gaataatatgtctacc-tttgtgaactctaatcaaaagactgcagatat-ttaagcaaaagtttggcaagacccatctttgagcatttgataagcaagat 106  Q
    |||| ||||| ||||| ||||||| ||||| |||| | ||||| ||||| |||| |||||| |||||||||||| ||||||||||||||||||||||| |    
T  56518476 gaatcatatgcctaccatttgtgacctctagtcaacaaactgcggatatcttaaccaaaagattggcaagacccgtctttgagcatttgataagcaagtt 56518575  T
Q  107 gggc--atgatagatatctatgcaccaac 133  Q
    || |  |||||||||||| ||| ||||||    
T  56518576 ggccatatgatagatatcgatgaaccaac 56518604  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 25244800 - 25244756
Alignment:
Q  110 catgatagatatctatgcaccaacttgagaggggtgttggaatgt 154  Q
    |||||| ||| |||||||||||||||||||||||||||| |||||    
T  25244800 catgattgatctctatgcaccaacttgagaggggtgttgaaatgt 25244756  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 13417453 - 13417413
Alignment:
Q  109 gcatgatagatatctatgcaccaacttgagaggggtgttgg 149  Q
    |||| ||||||||||||||| ||||||||| ||||||||||    
T  13417453 gcatcatagatatctatgcatcaacttgaggggggtgttgg 13417413  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 36074001 - 36073942
Alignment:
Q  84 tttgagcatttgataagcaagatgggcatgatagatatctatgcaccaacttgagagggg 143  Q
    ||||||||| | ||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  36074001 tttgagcatctcataagcaagttgggcatgattgatatctatgcaccaacttgagggggg 36073942  T

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