View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_53 (Length: 344)
Name: NF1297_low_53
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 16435929 - 16435630
Alignment:
| Q |
12 |
atgaatgtgttatattgtgtatattgattggaataattatcgcatcaaaatcattcaagcctaaatccacgtgacttatatactcaagttctagaacaga |
111 |
Q |
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| T |
16435929 |
atgaatgtgttatattgtgtatattgattggaataattatcgcatcaaaatcattcaagcctaaattcacgtgacttatatactcaagttctaaaacaga |
16435830 |
T |
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| Q |
112 |
tagagtaatctgacctttcaacattgaatcgttgagatccaattctgtaactcttccagtagcattgtcacaagttacaccttcccagatacaacaatct |
211 |
Q |
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| T |
16435829 |
tagagtaatctgacctttcaaccttgaatcgttgagatccaattctgtaactcttccagtagcgttgtcacaagttacaccttcccagatacaacaatcc |
16435730 |
T |
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| Q |
212 |
gtgtttgttgactgaccatgttgatgtcggacaatctgaactatcaaggattccggttgtcaaggttactaatatctctttatgcttatcatggcatttc |
311 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| || | ||| | | |||||||||||||| ||||||||| |||||| |
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| T |
16435729 |
gtgtttgt----tgaccatgttgatgtcggacaatctgaactatcaaggattccgattttaaagatcaataatatctctttatccttatcatgacatttc |
16435634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 315
Target Start/End: Original strand, 16436865 - 16437164
Alignment:
| Q |
12 |
atgaatgtgttatattgtgtatattgattggaataattatcgcatcaaaatcattcaagcctaaatccacgtgacttatatactcaagttctagaacaga |
111 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| | |
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| T |
16436865 |
atgaatgtgttatattgtgtatattgattggaatacttatcgcatcaaaatcattcaagtctaaatcgacgtgaattatatactcaagttctagaacata |
16436964 |
T |
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| Q |
112 |
tagagtaatctgacctttcaacattgaatcgttgagatccaattctgtaactcttccagtagcattgtcacaagttacaccttcccagatacaacaatct |
211 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
16436965 |
tagagtaatctgacctttcaaccttgaatcgttgagatccaattctgtaactcttccagtagcgttgtcacaagttacaccttcccaggtacaacaatct |
16437064 |
T |
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| Q |
212 |
gtgtttgttgactgaccatgttgatgtcggacaatctgaactatcaaggattccggttgtcaaggttactaatatctctttatgcttatcatggcatttc |
311 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | ||| | | |||||||||||||| |||||||||||||||| |
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| T |
16437065 |
gtgtttgt----tgaccatgttgatgtcggacaatcggaactatcaaggattccggttttgaagatcaataatatctctttatccttatcatggcatttc |
16437160 |
T |
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