View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_low_56 (Length: 333)

Name: NF1297_low_56
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_low_56
NF1297_low_56
[»] chr7 (12 HSPs)
chr7 (209-333)||(7676113-7676237)
chr7 (107-202)||(30401677-30401772)
chr7 (107-145)||(30916448-30916486)
chr7 (156-197)||(24996684-24996725)
chr7 (156-203)||(24995852-24995899)
chr7 (156-203)||(29060740-29060787)
chr7 (156-203)||(32871141-32871188)
chr7 (156-203)||(42607081-42607128)
chr7 (110-147)||(29006404-29006441)
chr7 (110-147)||(29007153-29007190)
chr7 (166-203)||(44540988-44541025)
chr7 (156-204)||(36844611-36844659)
[»] chr4 (13 HSPs)
chr4 (99-203)||(22061330-22061434)
chr4 (109-203)||(39429891-39429985)
chr4 (106-196)||(39429232-39429322)
chr4 (109-197)||(23424477-23424565)
chr4 (106-148)||(22062177-22062219)
chr4 (106-196)||(23425158-23425248)
chr4 (105-145)||(34372229-34372269)
chr4 (107-203)||(20351263-20351359)
chr4 (156-203)||(25970106-25970153)
chr4 (116-196)||(39652020-39652100)
chr4 (108-203)||(41261843-41261938)
chr4 (110-147)||(31910611-31910648)
chr4 (156-196)||(36450735-36450775)
[»] chr8 (6 HSPs)
chr8 (106-196)||(42345401-42345491)
chr8 (109-203)||(42346059-42346153)
chr8 (106-196)||(7054097-7054187)
chr8 (112-148)||(7054774-7054810)
chr8 (156-203)||(35840531-35840578)
chr8 (156-204)||(35943840-35943888)
[»] chr3 (7 HSPs)
chr3 (109-203)||(43768713-43768807)
chr3 (156-203)||(49161809-49161856)
chr3 (106-196)||(43768033-43768122)
chr3 (111-146)||(32321367-32321402)
chr3 (107-145)||(44406255-44406293)
chr3 (106-148)||(45298310-45298352)
chr3 (107-144)||(47480566-47480603)
[»] chr2 (10 HSPs)
chr2 (109-203)||(20991973-20992067)
chr2 (106-196)||(20991294-20991384)
chr2 (106-148)||(20244605-20244647)
chr2 (156-203)||(23876064-23876111)
chr2 (156-203)||(36390957-36391004)
chr2 (157-202)||(15602822-15602867)
chr2 (156-201)||(36391673-36391718)
chr2 (156-204)||(2307074-2307122)
chr2 (156-204)||(6084870-6084918)
chr2 (156-196)||(7868142-7868182)
[»] chr5 (9 HSPs)
chr5 (112-203)||(9923388-9923479)
chr5 (109-203)||(1969779-1969873)
chr5 (106-196)||(9924075-9924164)
chr5 (106-196)||(1970466-1970555)
chr5 (156-198)||(4789525-4789567)
chr5 (109-148)||(4606943-4606982)
chr5 (107-145)||(18153386-18153424)
chr5 (156-197)||(26712389-26712430)
chr5 (156-197)||(26982127-26982168)
[»] scaffold0318 (1 HSPs)
scaffold0318 (109-203)||(3809-3903)
[»] chr1 (8 HSPs)
chr1 (109-204)||(50428100-50428195)
chr1 (156-201)||(30466184-30466229)
chr1 (105-196)||(50427430-50427521)
chr1 (107-145)||(29334899-29334937)
chr1 (112-146)||(36385729-36385763)
chr1 (105-146)||(41134582-41134623)
chr1 (163-203)||(13908394-13908434)
chr1 (156-204)||(31788277-31788325)
[»] chr6 (1 HSPs)
chr6 (156-204)||(29290122-29290170)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 209 - 333
Target Start/End: Complemental strand, 7676237 - 7676113
Alignment:
Q  209 taataagggttcacaccaagtagaatagtgtatatcacatgcaacaagtaaatatatgagtatcctctaacaagggttcacacttagtttggaataatat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  7676237 taataagggttcacaccaagtagaatagtgtatatcacatgcaacaagtaaatatatgagtatcctctaactagggttcacacttagtttggaataaaat 7676138  T
Q  309 ggtggcatgagttgaaacgttaaaa 333  Q
    ||||| |||||||||||||||||||    
T  7676137 ggtggtatgagttgaaacgttaaaa 7676113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 30401772 - 30401677
Alignment:
Q  107 agtccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaacctcac 202  Q
    |||||||||||||||| |||||||  ||||||||||||||||       |||||||||  |||||| ||| || || ||||||| |||||||||||    
T  30401772 agtccatgataaaattaatactccattttaatctaatggttgaaaaaaactttcccatgatgggaatcaattctccattcccatactaaacctcac 30401677  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 30916448 - 30916486
Alignment:
Q  107 agtccatgataaaattcatactcctctttaatctaatgg 145  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  30916448 agtccatgataaaattaatactcctctttaatctaatgg 30916486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 24996684 - 24996725
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaac 197  Q
    ||||||||| ||||||||||||||||| ||||||||||||||    
T  24996684 ctttcccatggtgggaaacaactcccctttcccatgctaaac 24996725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 24995899 - 24995852
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||| ||||    
T  24995899 ctttcccatggtgggaaacaactcccctttcccattctaaaccccacc 24995852  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 29060740 - 29060787
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||| ||||    
T  29060740 ctttcccatggtgggaaacaattcccctttcccatgctaaaccccacc 29060787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 32871141 - 32871188
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    |||||| || ||||||||||||||||| ||||||||||||||| ||||    
T  32871141 ctttcctatggtgggaaacaactccccattcccatgctaaaccccacc 32871188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 42607128 - 42607081
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||| ||||    
T  42607128 ctttcccatggtgggaaacaattcccctttcccatgctaaaccccacc 42607081  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 29006441 - 29006404
Alignment:
Q  110 ccatgataaaattcatactcctctttaatctaatggtt 147  Q
    |||||||||||||  |||||||||||||||||||||||    
T  29006441 ccatgataaaattggtactcctctttaatctaatggtt 29006404  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 29007153 - 29007190
Alignment:
Q  110 ccatgataaaattcatactcctctttaatctaatggtt 147  Q
    |||||||||||||  |||||||||||||||||||||||    
T  29007153 ccatgataaaattagtactcctctttaatctaatggtt 29007190  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 44541025 - 44540988
Alignment:
Q  166 gtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    |||||||||||||| || ||||||||||||||||||||    
T  44541025 gtgggaaacaactctcctttcccatgctaaacctcacc 44540988  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 36844659 - 36844611
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcaccc 204  Q
    ||||| ||| |||||||||||||| || ||||||||||||||| |||||    
T  36844659 ctttctcatggtgggaaacaactcacctttcccatgctaaaccccaccc 36844611  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 22061434 - 22061330
Alignment:
Q  99 gtgtgaacagtccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaacc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||| |||| |||||||| |||||||| ||||||||||    
T  22061434 gtgtgaacagtccatgataaaattcatactcctctttaatctaatggttgaaaaaaactttcccatggtggaaaacaacttccccttccaatgctaaacc 22061335  T
Q  199 tcacc 203  Q
    |||||    
T  22061334 tcacc 22061330  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 39429891 - 39429985
Alignment:
Q  109 tccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    |||||||||||||| ||||||||||||||| |||||||||       ||||||||| |||||||||||||| || ||||||||||||||| ||||    
T  39429891 tccatgataaaattaatactcctctttaatttaatggttgaaaaaaactttcccatggtgggaaacaactctccattcccatgctaaaccccacc 39429985  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 39429322 - 39429232
Alignment:
Q  106 cagtccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaa 196  Q
    ||||||||||||||||| ||||||||| |||||||||||||||       ||||||||| || ||||||||||| || |||||||||||||    
T  39429322 cagtccatgataaaattaatactcctccttaatctaatggttgaaaaaaactttcccatggtaggaaacaactctccattcccatgctaaa 39429232  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 23424565 - 23424477
Alignment:
Q  109 tccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaac 197  Q
    |||||||||||||| |||||||||||||||||||||||||       ||||| ||| |||| ||||||||| || ||||| ||||||||    
T  23424565 tccatgataaaattaatactcctctttaatctaatggttgaaaaaaactttctcatggtggaaaacaactctccattcccttgctaaac 23424477  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 22062177 - 22062219
Alignment:
Q  106 cagtccatgataaaattcatactcctctttaatctaatggttg 148  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  22062177 cagtccatgataaaattcatactcatctttaatctaatggttg 22062219  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 23425158 - 23425248
Alignment:
Q  106 cagtccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaa 196  Q
    ||||||||||||||||| |||||| |  |||||||||||||||       ||||||||| |||||||||||||| || ||||||| |||||    
T  23425158 cagtccatgataaaattaatactcattcttaatctaatggttgaaaaaaactttcccatggtgggaaacaactctccattcccatactaaa 23425248  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 34372229 - 34372269
Alignment:
Q  105 acagtccatgataaaattcatactcctctttaatctaatgg 145  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  34372229 acagtccatgataaaattaatactcctctttaatctaatgg 34372269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 20351263 - 20351359
Alignment:
Q  107 agtccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    |||||||||||||||| ||||| |||||||||||||| ||||       ||||  ||| |||||||||||||| || ||||||| ||||||| ||||    
T  20351263 agtccatgataaaattaatacttctctttaatctaatagttgaaaaaaactttttcatggtgggaaacaactctccattcccatactaaaccccacc 20351359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 25970153 - 25970106
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  25970153 ctttcccatggtgggaaacaactcccctttcccatgctaaaccccacc 25970106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 39652020 - 39652100
Alignment:
Q  116 taaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaa 196  Q
    ||||||| ||||||||| ||||| |||||||||       ||||||||| ||| |||||||||| || |||||||||||||    
T  39652020 taaaattaatactcctccttaatttaatggttgaaaaaaactttcccatggtgagaaacaactctccattcccatgctaaa 39652100  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 41261843 - 41261938
Alignment:
Q  108 gtccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    ||||||||||||||| |||||| |||||||||||||| ||        ||||||||| || ||||||||||| |  ||||||| ||||||| ||||    
T  41261843 gtccatgataaaattaatactcatctttaatctaatgattcaaaaaaactttcccatggtaggaaacaactctcatttcccatactaaaccccacc 41261938  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 31910648 - 31910611
Alignment:
Q  110 ccatgataaaattcatactcctctttaatctaatggtt 147  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  31910648 ccatgataaaattgatactcctctttaatttaatggtt 31910611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 36450775 - 36450735
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaa 196  Q
    ||||||||| |||| |||||||||||| |||||||||||||    
T  36450775 ctttcccatggtggaaaacaactcccctttcccatgctaaa 36450735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 42345491 - 42345401
Alignment:
Q  106 cagtccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaa 196  Q
    ||||||||||||||||| ||||||||| |||||||||||||||       ||||||||| |||||||||||||| || |||||||||||||    
T  42345491 cagtccatgataaaattaatactcctccttaatctaatggttgaaaaaaactttcccatggtgggaaacaactctccattcccatgctaaa 42345401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 42346059 - 42346153
Alignment:
Q  109 tccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    |||||||||||||| |||||||||||||||||||||||||       |||||||||  ||||||||||||| || ||||||||||||||| ||||    
T  42346059 tccatgataaaattaatactcctctttaatctaatggttgaaaaaaactttcccatgatgggaaacaactctccattcccatgctaaaccccacc 42346153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 7054187 - 7054097
Alignment:
Q  106 cagtccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaa 196  Q
    ||||||||||||||||| ||||||||| |||||||||||||||       |||| |||| |||||||||||||| || |||||||||||||    
T  7054187 cagtccatgataaaattaatactcctccttaatctaatggttgaaaaaaacttttccatggtgggaaacaactctccattcccatgctaaa 7054097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 7054774 - 7054810
Alignment:
Q  112 atgataaaattcatactcctctttaatctaatggttg 148  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7054774 atgataaaattaatactcctctttaatctaatggttg 7054810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 35840531 - 35840578
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  35840531 ctttcccatcgtgggaaacaacttccctttcccatgctaaaccccacc 35840578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 35943840 - 35943888
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcaccc 204  Q
    |||| |||||||||||||||| || || ||||||||||||||| |||||    
T  35943840 cttttccatagtgggaaacaattctcctttcccatgctaaaccccaccc 35943888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 43768713 - 43768807
Alignment:
Q  109 tccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    |||||||||||||| |||||||||||||||||||||||||       ||||||||| |||| ||||||||| || ||||||||||||||| ||||    
T  43768713 tccatgataaaattaatactcctctttaatctaatggttgaaaaaaactttcccatggtggaaaacaactctccattcccatgctaaaccccacc 43768807  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 49161809 - 49161856
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  49161809 ctttcccatggtgggaaacaattcccctttcccatgctaaacctcacc 49161856  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 43768122 - 43768033
Alignment:
Q  106 cagtccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaa 196  Q
    ||||||||||||||||| |||||| |  ||||||||||||||        ||||||||| |||||||||||||| || |||||||||||||    
T  43768122 cagtccatgataaaattaatactcattcttaatctaatggtt-aaaaaaactttcccatggtgggaaacaactctccattcccatgctaaa 43768033  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 32321367 - 32321402
Alignment:
Q  111 catgataaaattcatactcctctttaatctaatggt 146  Q
    |||||||||||| |||||||||||||||||||||||    
T  32321367 catgataaaatttatactcctctttaatctaatggt 32321402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 44406293 - 44406255
Alignment:
Q  107 agtccatgataaaattcatactcctctttaatctaatgg 145  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  44406293 agtccatgataaaattaatactcttctttaatctaatgg 44406255  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 45298310 - 45298352
Alignment:
Q  106 cagtccatgataaaattcatactcctctttaatctaatggttg 148  Q
    ||||||||||||||||| |||| |||||||||||| |||||||    
T  45298310 cagtccatgataaaattgatacacctctttaatctgatggttg 45298352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 47480603 - 47480566
Alignment:
Q  107 agtccatgataaaattcatactcctctttaatctaatg 144  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  47480603 agtccatgataaaattaatactcctctttaatttaatg 47480566  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 20991973 - 20992067
Alignment:
Q  109 tccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    |||||||||||||| |||||||||||||||||||||||||       ||||||||| |||| ||||||||| || ||||||||||||||| ||||    
T  20991973 tccatgataaaattaatactcctctttaatctaatggttgaaaaaaactttcccatggtggaaaacaactctccattcccatgctaaaccccacc 20992067  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 20991384 - 20991294
Alignment:
Q  106 cagtccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaa 196  Q
    ||||||||||||||||| |||||| | ||||||||||||||||       ||||||||| |||| ||||||||| || |||||||||||||    
T  20991384 cagtccatgataaaattaatactcatttttaatctaatggttgaaaaaaactttcccatggtggaaaacaactctccattcccatgctaaa 20991294  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 20244605 - 20244647
Alignment:
Q  106 cagtccatgataaaattcatactcctctttaatctaatggttg 148  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  20244605 cagtccatgataaaattaattctcctctttaatctaatggttg 20244647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 23876064 - 23876111
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    ||||||||| ||||||||||||||||  ||||||||||||||| ||||    
T  23876064 ctttcccatggtgggaaacaactcccatttcccatgctaaaccccacc 23876111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 36391004 - 36390957
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||| ||||    
T  36391004 ctttcccatggtgggaaacaacttccctttcccatgctaaaccccacc 36390957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 15602822 - 15602867
Alignment:
Q  157 tttcccatagtgggaaacaactcccccttcccatgctaaacctcac 202  Q
    |||||||| ||||||||||||| ||| |||| ||||||||||||||    
T  15602822 tttcccatggtgggaaacaacttccctttcctatgctaaacctcac 15602867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 36391673 - 36391718
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctca 201  Q
    ||||||||| |||| |||||||||||| ||||||| ||||||||||    
T  36391673 ctttcccatggtggaaaacaactcccctttcccatactaaacctca 36391718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 2307074 - 2307122
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcaccc 204  Q
    ||||| ||| |||| |||||||| ||| |||||||||||||||||||||    
T  2307074 ctttctcatggtggaaaacaacttccctttcccatgctaaacctcaccc 2307122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 6084918 - 6084870
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcaccc 204  Q
    |||||||||  |||||||||| ||||| |||||||| ||||||||||||    
T  6084918 ctttcccatgatgggaaacaattcccctttcccatgttaaacctcaccc 6084870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 7868142 - 7868182
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaa 196  Q
    ||||||||| ||||||||||||||||| ||| |||||||||    
T  7868142 ctttcccatggtgggaaacaactcccctttctcatgctaaa 7868182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 9923479 - 9923388
Alignment:
Q  112 atgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    ||||||||||| |||||||||||||||||||||||||       |||| |||| |||||||||||||| || ||||||||||||||| ||||    
T  9923479 atgataaaattaatactcctctttaatctaatggttgaaaaaaacttttccatggtgggaaacaactctccattcccatgctaaaccccacc 9923388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 1969873 - 1969779
Alignment:
Q  109 tccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    |||||||||||||| |||||||||||||||||||||||||       ||||||||| ||   ||||||||| || ||||||||||||||| ||||    
T  1969873 tccatgataaaattaatactcctctttaatctaatggttgaaaaaaactttcccatggtaaaaaacaactctccattcccatgctaaaccccacc 1969779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 9924075 - 9924164
Alignment:
Q  106 cagtccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaa 196  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||       ||||||||| ||||||||||||| | || ||||||||||||    
T  9924075 cagtccatgataaaattaatactcctccttaatttaatggttgaaaaaaactttcccatggtgggaaacaact-ctccatcccatgctaaa 9924164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 1970466 - 1970555
Alignment:
Q  106 cagtccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaa 196  Q
    ||||||||||||||||| |||||| |  |||||||||||||||       ||||||||| |||||||||||||| || |||||||||||||    
T  1970466 cagtccatgataaaattaatactcattcttaatctaatggttgaaaaaa-ctttcccatggtgggaaacaactctccattcccatgctaaa 1970555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 4789567 - 4789525
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacc 198  Q
    ||||||||| ||||||||||||||||| |||||||||||||||    
T  4789567 ctttcccatggtgggaaacaactcccctttcccatgctaaacc 4789525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 4606982 - 4606943
Alignment:
Q  109 tccatgataaaattcatactcctctttaatctaatggttg 148  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  4606982 tccatgataaaattaatactcctctttaatttaatggttg 4606943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 18153386 - 18153424
Alignment:
Q  107 agtccatgataaaattcatactcctctttaatctaatgg 145  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  18153386 agtccatgataaaattaatactcctttttaatctaatgg 18153424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 26712389 - 26712430
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaac 197  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||    
T  26712389 ctttcccatggtgggaaacaacttccctttcccatgctaaac 26712430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 26982127 - 26982168
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaac 197  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||    
T  26982127 ctttcccatggtgggaaacaacttccctttcccatgctaaac 26982168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 3809 - 3903
Alignment:
Q  109 tccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    |||||||||||||| |||||||| ||||||||||||||||       ||||||||| |||| ||||||||| || ||| ||| ||||||||||||    
T  3809 tccatgataaaattaatactcctttttaatctaatggttgaaaaaaactttcccattgtggaaaacaactctccattctcatactaaacctcacc 3903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 50428100 - 50428195
Alignment:
Q  109 tccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaacctcaccc 204  Q
    |||||||||||||| ||||||||||||||| |||||||||       |||||||||  ||| ||||||||| || ||||||| ||||||| |||||    
T  50428100 tccatgataaaattaatactcctctttaatttaatggttgaaaaaaactttcccatgatggaaaacaactctccattcccattctaaaccccaccc 50428195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 30466229 - 30466184
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctca 201  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  30466229 ctttcccatggtgggaaacaactccccattcccatgctaaacctca 30466184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 50427521 - 50427430
Alignment:
Q  105 acagtccatgataaaattcatactcctctttaatctaatggttgnnnnnnnctttcccatagtgggaaacaactcccccttcccatgctaaa 196  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||       |||| ||||| || ||||||| || || |||||||||||||    
T  50427521 acagttcatgataaaattaatactcctttttaatctaatggttgaaaaaaacttttccataatgagaaacaattctccattcccatgctaaa 50427430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 29334899 - 29334937
Alignment:
Q  107 agtccatgataaaattcatactcctctttaatctaatgg 145  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  29334899 agtccatgataaaattaatactcctctttaatttaatgg 29334937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 36385763 - 36385729
Alignment:
Q  112 atgataaaattcatactcctctttaatctaatggt 146  Q
    ||||||||||| |||||||||||||||||||||||    
T  36385763 atgataaaattaatactcctctttaatctaatggt 36385729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 41134582 - 41134623
Alignment:
Q  105 acagtccatgataaaattcatactcctctttaatctaatggt 146  Q
    |||| ||||| ||||||| |||||||||||||||||||||||    
T  41134582 acagaccatggtaaaattaatactcctctttaatctaatggt 41134623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 13908394 - 13908434
Alignment:
Q  163 atagtgggaaacaactcccccttcccatgctaaacctcacc 203  Q
    ||||||| |||||||| ||| ||||||||||||||||||||    
T  13908394 atagtggaaaacaacttccctttcccatgctaaacctcacc 13908434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 31788277 - 31788325
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcaccc 204  Q
    ||||||||| ||||||||||||| | | ||||||| |||||||||||||    
T  31788277 ctttcccatggtgggaaacaacttctcattcccatactaaacctcaccc 31788325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 29290170 - 29290122
Alignment:
Q  156 ctttcccatagtgggaaacaactcccccttcccatgctaaacctcaccc 204  Q
    ||||||||| |||||||||||||| || || |||||||||||| |||||    
T  29290170 ctttcccatggtgggaaacaactctccatttccatgctaaaccccaccc 29290122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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