View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_low_57 (Length: 325)

Name: NF1297_low_57
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_low_57
NF1297_low_57
[»] chr1 (1 HSPs)
chr1 (29-314)||(26428075-26428362)
[»] chr2 (1 HSPs)
chr2 (67-215)||(28008623-28008773)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 29 - 314
Target Start/End: Complemental strand, 26428362 - 26428075
Alignment:
Q  29 aattttctcaacccacaaactactatgaggcagtgaagatgaaatcagttttatatcatagctgtactctcaacaacaacactgtactttacacttcttt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26428362 aattttctcaacccacaaactactatgaggcagtgaagatgaaatcagttttatatcatagctgtactctcaacaacaacactgtactttacacttcttt 26428263  T
Q  129 ttctcatttctctctcaaaataaagtcattcgtagtcnnnnnnnacccttcaa--tctctctctcaaaccctaaaaccttgcaaagattcacacatatct 226  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  26428262 ttctcatttctctctcaaaataaagtcattcgtagtctttttttacccttcaatctctctctctcaaaccctaaaaccttgcaaagattcacacatatct 26428163  T
Q  227 acaagatttcttctctagaagatttcttctatatactttcttaattctagcacactgtcaggtctcactttctagattttctacctat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26428162 acaagatttcttctctagaagatttcttctatatactttcttaattctagcacactgtcaggtctcactttctagattttctacctat 26428075  T

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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 215
Target Start/End: Original strand, 28008623 - 28008773
Alignment:
Q  67 atgaaatcagttttatat--catagctgtactctcaacaacaacactgtacttt-acacttctttttctcatttctctctcaaaataaagtcattcgtag 163  Q
    ||||||||||||||||||  |||||||||| ||||  |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || ||    
T  28008623 atgaaatcagttttatatatcatagctgtattctct-caacaacactctacttttacacttctttttctcatttctctctcaaaataaagtcatacgcag 28008721  T
Q  164 tcnnnnnnnacccttcaatctctctctcaaaccctaaaaccttgcaaagatt 215  Q
    ||        ||||||||||||||||||||||||| |||||| |||||||||    
T  28008722 tctttttttccccttcaatctctctctcaaaccctcaaacctagcaaagatt 28008773  T

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