View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_58 (Length: 325)
Name: NF1297_low_58
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 210 - 314
Target Start/End: Complemental strand, 42350434 - 42350330
Alignment:
| Q |
210 |
caatgtcttgaatgcatcattttcaagacaaaactttccatttaaacttattaatcagtgccatgaggacaatgattagcattaatataaacttttattt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42350434 |
caatgtcttgaatgcatcattttcaagacaaaacttttcatttaaacttcttaatcagtgccatgaggacaatgattagcattaatataaacttttattt |
42350335 |
T |
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| Q |
310 |
ttcat |
314 |
Q |
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||||| |
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| T |
42350334 |
ttcat |
42350330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 42350614 - 42350514
Alignment:
| Q |
30 |
tagtatacacattaaattgtgtaaaaatattaataagaagtgccaaaggtttttatagatagaaattgttgtcttttatttatgagtcttgctaatcaat |
129 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
42350614 |
tagtatacacattaaattgtgtaagaatattaaaaagaagtgccaaaggatcttatagatagaaattgttgtcttttatttatgagttttgctaaccaat |
42350515 |
T |
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| Q |
130 |
g |
130 |
Q |
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| T |
42350514 |
g |
42350514 |
T |
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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 26683700 - 26683782
Alignment:
| Q |
210 |
caatgtcttgaatgcatcattttcaagacaaaactttccatttaaacttattaatcagtgccatgaggacaatgattagcatt |
292 |
Q |
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||||||||||||||||| |||||||||||||||||| || |||| |||| |||||| ||||| ||||| |||||||||||||| |
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| T |
26683700 |
caatgtcttgaatgcattattttcaagacaaaacttcccttttagacttcttaatcggtgccctgagggcaatgattagcatt |
26683782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 31188802 - 31188884
Alignment:
| Q |
210 |
caatgtcttgaatgcatcattttcaagacaaaactttccatttaaacttattaatcagtgccatgaggacaatgattagcatt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||| |||| |||||| | ||| |||||| ||||||| |
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| T |
31188802 |
caatgtcttgaatgcatcattttcaagacaaaacttcctttttaaacttcttaactagtgccctcagggcaatgactagcatt |
31188884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 245
Target Start/End: Complemental strand, 5000383 - 5000348
Alignment:
| Q |
210 |
caatgtcttgaatgcatcattttcaagacaaaactt |
245 |
Q |
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| T |
5000383 |
caatgtcttgaatgcatcatttccaagacaaaactt |
5000348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 42826638 - 42826691
Alignment:
| Q |
210 |
caatgtcttgaatgcatcattttcaagacaaaactttccatttaaacttattaa |
263 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||| |||| |||| |
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| T |
42826638 |
caatgtcttgaatgcataattttcaagacaaaactttccttttagacttcttaa |
42826691 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 6539849 - 6539767
Alignment:
| Q |
210 |
caatgtcttgaatgcatcattttcaagacaaaactttccatttaaacttattaatcagtgccatgaggacaatgattagcatt |
292 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||| |||| |||||||| ||| |||| |||||||| |
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| T |
6539849 |
caatgtcttgaatgcatcattttcaaaacaaaacttcatttttaaacttcttaactagtgccatcagggcaatagttagcatt |
6539767 |
T |
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