View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1297_low_61 (Length: 322)
Name: NF1297_low_61
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_61 |
 | |
|
| [»] scaffold1643 (1 HSPs) |
| | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
| [»] scaffold0958 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1643 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 706 - 994
Alignment:
| Q |
1 |
ttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
706 |
ttaagcaaaggaaacccttcaggacacaaccattcctcccaattgttcaacttctcaaatttcaaaacttcaagggacaagaacggaacatgcgttaaat |
805 |
T |
|
| Q |
101 |
tgttgttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatg |
200 |
Q |
| |
|
|| || ||||||| |||||||||||||||||||||||| ||||| | |||||||||||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
806 |
tgctg---ccatgaatctcttcaccaatgatctttattccatcacaatatgaaatagaaagattcttgagagaaggaagctgcccaagtggtggaaaatg |
902 |
T |
|
| Q |
201 |
ggaacataatccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtagc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
903 |
ggaacataatccacagcttaacagttgaagagatactaagttgggtaaatgacaacctgttatccaatttggaaagttgctgccattgtagc |
994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 8470093 - 8470365
Alignment:
| Q |
1 |
ttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8470093 |
ttaagcaaaggaaacccttcaagacacaaccattcctcccaactgttcatcttcacaaatttcaaaacttcaagggacaagaacggaacatttgttgaa- |
8470191 |
T |
|
| Q |
101 |
tgttgttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| | ||| | | |||| ||||||||||||| | || ||||| |||||||||| |||||| |
|
|
| T |
8470192 |
--ttgttgccatgaaactcttcaccaattatctttattccatgacagtcacagatagcaagctccttgagacacgggagctgtccaagtggtggcaaatg |
8470289 |
T |
|
| Q |
201 |
ggaacataatccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaag |
276 |
Q |
| |
|
| |||| |||||||||| | || ||||||||| ||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
8470290 |
gagacatgatccacagctctgtaatttaagagatactaagtttggtaaatgacaaccccttatccactttggaaag |
8470365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 6796111 - 6795862
Alignment:
| Q |
1 |
ttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||| |||||||||| || |
|
|
| T |
6796111 |
ttaagcaaaggaaacccttcaagacaaaaccattcctcccaattgtccatctcctcaaatttcaaaacctcaagggacctgaacgaaacatttgttgaac |
6796012 |
T |
|
| Q |
101 |
tgttgttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatg |
200 |
Q |
| |
|
| |||||| | ||| ||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||| || |||||||| |||| || ||||| |
|
|
| T |
6796011 |
tattgttg---taaaattcttcaccaatgatcattattccgtcacatcttgaaatggaaaggtccttgagagaggggagctgccctagtgctggcaaatc |
6795915 |
T |
|
| Q |
201 |
ggaacataatccacagcttaacagttgaagagataccaagttgggtaaatgac |
253 |
Q |
| |
|
||||||||||||| || | ||||||||||||||| ||||||| |||||||| |
|
|
| T |
6795914 |
ggaacataatccatagtcttgcagttgaagagatactaagttggataaatgac |
6795862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 6945804 - 6946091
Alignment:
| Q |
1 |
ttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaat |
100 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||||||||||||||| ||| | ||| ||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
6945804 |
ttaagcaaaggaaacctttcaggacaaaaccattcctcccaattgaccatatgctccaatttcaaaacttcaagggacctgaacggaacatttgttgtac |
6945903 |
T |
|
| Q |
101 |
tgttgttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatg |
200 |
Q |
| |
|
| |||||| | ||||||||| || |||||||||||||||| ||| ||||||||||||| |||||||||||| || | ||||||||| || ||||| |
|
|
| T |
6945904 |
tattgttg---taaaactcttcgccgatgatctttattccgttacagtttgaaatagaaatctccttgagagaggggaactgcccaagcattggtaaatg |
6946000 |
T |
|
| Q |
201 |
ggaacataatccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtag |
291 |
Q |
| |
|
|||||||| | ||||| ||||| ||||||||| ||||| | ||||||| |||| ||| ||||||||||||| | |||||||||||| |
|
|
| T |
6946001 |
ggaacatagtacacagtccttcagtttaagagatactaagtttgataaatgaaaaccacttagccaatttggaaagctactgccattgtag |
6946091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 8453168 - 8453440
Alignment:
| Q |
1 |
ttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | |||||| || || |
|
|
| T |
8453168 |
ttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagagacctgaacagcacatttattgaac |
8453267 |
T |
|
| Q |
101 |
tgttgttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatg |
200 |
Q |
| |
|
| ||| | | |||||||||||| |||||||||||||| ||||| | ||||||||||||| ||||||| | || || ||||||||||| ||| |
|
|
| T |
8453268 |
tactgt---cgtaaaactcttcacctatgatctttattccatcacagtctgaaatagaaagcatcttgagaaaggggagtgtcccaagtggtggcaacaa |
8453364 |
T |
|
| Q |
201 |
ggaacataatccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaag |
276 |
Q |
| |
|
|||||||||||||| || | ||||||||| ||||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
8453365 |
agaacataatccacaaaactgtagattaagagatactaagtttggtaaatgataaccccttatccaatttggaaag |
8453440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 6481472 - 6481211
Alignment:
| Q |
11 |
gaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgcc |
110 |
Q |
| |
|
||||||||||| |||| |||||||||||| |||| | |||| || ||||| |||||||||||| ||| ||| | | || || || |||| || || |
|
|
| T |
6481472 |
gaaacccttcatgacataaccattcctccaaattttccatccgctgaaattccaaaacttcaagagacctgaatgcatcaatttttgaattattt---cc |
6481376 |
T |
|
| Q |
111 |
atgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacataat |
210 |
Q |
| |
|
|| ||||||||||| ||||||||||||| | ||| |||||||||||||||||| ||||||| || || ||||||||||||| |||||| ||||||||| |
|
|
| T |
6481375 |
atataactcttcaccgatgatctttattcttttacagtttgaaatagaaagctccctgagagaggggagttgcccaagtggtggcaaatgagaacataat |
6481276 |
T |
|
| Q |
211 |
ccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaa |
275 |
Q |
| |
|
|||||| || |||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6481275 |
ccacagtgacgcatttgaagagatactaagttgggtaaatgacaaccccttatccaatttggaaa |
6481211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 8570451 - 8570164
Alignment:
| Q |
1 |
ttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| | ||||| || |
|
|
| T |
8570451 |
ttaagcaaaggaaacccttcaatacaaaaccattcctcccaattgttcatccatgcaaattccaaaacttcaagggacctgaacggaataattgttgaa- |
8570353 |
T |
|
| Q |
101 |
tgttgttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatg |
200 |
Q |
| |
|
| ||||| | |||||||| |||||||| | ||| || | ||| | |||||||||||||||||||||| | || |||||||||||||| | ||| |
|
|
| T |
8570352 |
--ctattgccgtaaaactctttgccaatgatttctataccataacaatatgaaatagaaagctccttgagataggggagctgcccaagtggcggcaacat |
8570255 |
T |
|
| Q |
201 |
ggaacataatccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtag |
291 |
Q |
| |
|
||||||||||| ||| |||| ||||||||| |||||||||||| || ||||| ||| ||||||||||||| | |||||||||||| |
|
|
| T |
8570254 |
ggaacataatctacactggtgtagtttaagagatactaagttgggtaaaagaaaacccattaaccaatttggaaagctactgccattgtag |
8570164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6840392 - 6840319
Alignment:
| Q |
1 |
ttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaag |
74 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6840392 |
ttaagcaaaggaaacccttcaagacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaag |
6840319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 5262423 - 5262565
Alignment:
| Q |
108 |
gccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacat |
207 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||| | ||||| ||||||||||||||| || ||||| ||||||| ||||||||||| ||| ||||||| |
|
|
| T |
5262423 |
gccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctctttaagagagggaagcttcccaagtggtggcaaccgggaacaa |
5262522 |
T |
|
| Q |
208 |
aatccacagcttaacagttgaagagataccaagttgggtaaat |
250 |
Q |
| |
|
|||||||| || ||||| ||| |||||||||||| |||||| |
|
|
| T |
5262523 |
aatccacatctattcagttcaagggataccaagttgagtaaat |
5262565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 5279299 - 5279406
Alignment:
| Q |
108 |
gccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacat |
207 |
Q |
| |
|
||||| |||||||||||| || |||| |||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||| || ||| |||| |
|
|
| T |
5279299 |
gccataaaactcttcaccgataatctctattccatcacattctgaaatagaaagctccttaagagagggaagctgcccaagtggtggaaactggaaacaa |
5279398 |
T |
|
| Q |
208 |
aatccaca |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
5279399 |
aatccaca |
5279406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 275
Target Start/End: Complemental strand, 6555918 - 6555676
Alignment:
| Q |
30 |
ccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcaccaatg |
129 |
Q |
| |
|
|||||||||||| ||| ||| | ||||||| ||||| |||||||||| ||| |||||| ||||| |||| ||| |||| |||||||||| ||||| |
|
|
| T |
6555918 |
ccattcctcccagttgaccatatcctcaaatctcaaatattcaagggacttgaatggaacaattgttgaattattg---ccataaaactcttcatcaatg |
6555822 |
T |
|
| Q |
130 |
atctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacataatccacagcttaacagttgaa |
229 |
Q |
| |
|
||||||||||| ||||| | |||| ||||| | |||||||||||| || || ||||||| || |||| ||||||||| ||| | |||| || |
|
|
| T |
6555821 |
atctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacataacttacaacccttaagttcaa |
6555722 |
T |
|
| Q |
230 |
gagataccaagttgggtaaatgacaacccgttatccaatttggaaa |
275 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
6555721 |
gagatactaagttgggtaaatgacaaccccttagccaatttggaaa |
6555676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 6528378 - 6528110
Alignment:
| Q |
1 |
ttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaat |
100 |
Q |
| |
|
|||||||||||||||| | ||||| | ||||| |||||| || ||| ||||||||| || ||| || ||||||| ||| |||||| ||||| ||| |
|
|
| T |
6528378 |
ttaagcaaaggaaacctt---agacatatccatttctcccagttcaccatattctcaaatatcgaaaattgaagggacttgaatggaacaattgttgaat |
6528282 |
T |
|
| Q |
101 |
tgttgttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatg |
200 |
Q |
| |
|
| |||| ||| ||| |||||| |||||||||||||||| ||||| | ||| ||||| | ||| |||||||| || || ||||| |||| |||| |
|
|
| T |
6528281 |
tattgt---cataaaaatcttcatcaatgatctttattccttcacaatcataaacggaaagtttcttaagagaagggagttgtccaaggggtggcaaaca |
6528185 |
T |
|
| Q |
201 |
ggaacataatccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaa |
275 |
Q |
| |
|
||||||||| ||||| | ||||||||||||||| |||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
6528184 |
ggaacataacccacaaccattcagttgaagagatactaagttgggtaaatgactaccccttagccaatttggaaa |
6528110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 6450286 - 6450022
Alignment:
| Q |
9 |
aggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttg |
108 |
Q |
| |
|
||||||| |||||| | | ||||||||||||||||| | || || |||||||||||| |||||||| || ||| |||||| || || |||| || |
|
|
| T |
6450286 |
aggaaactcttcaataaataaccattcctcccaattctccaactgctcaaatttcaatacttcaagagatctgaatggaacaattattgaattattt--- |
6450190 |
T |
|
| Q |
109 |
ccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacata |
208 |
Q |
| |
|
|||| ||||||| || |||||||||||||| | ||| | ||||||| ||||| || ||| | || |||||||||||||| | ||| ||||||| | |
|
|
| T |
6450189 |
ccatagaactctttgccgatgatctttattccattacaatctgaaatacggagctctttaagaaatgggagctgcccaagtggcggcaacagggaacaaa |
6450090 |
T |
|
| Q |
209 |
atccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaag |
276 |
Q |
| |
|
| ||||||| ||||| ||||||||| ||||||||||||||||||||| | | ||||||||||||| |
|
|
| T |
6450089 |
tttcacagctccgcagttcaagagatactaagttgggtaaatgacaacccctcagccaatttggaaag |
6450022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 6730214 - 6729950
Alignment:
| Q |
9 |
aggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttg |
108 |
Q |
| |
|
||||||| |||||| | | ||||||||||||||||| | || | |||||||||||| |||||||| ||| ||| |||||| || || |||| || |
|
|
| T |
6730214 |
aggaaactcttcaataaataaccattcctcccaattctccaattgctcaaatttcaatacttcaagagacctgaatggaacaattattgaattattt--- |
6730118 |
T |
|
| Q |
109 |
ccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacata |
208 |
Q |
| |
|
|||| ||||||| || |||||||||||| | | ||| | ||||||| ||||| || ||| | || |||||||||||||| | ||| ||||||| | |
|
|
| T |
6730117 |
ccatagaactctttgccgatgatctttattacattacaatctgaaatacggagctctttaagaaatgggagctgcccaagtggcggcaacagggaacaaa |
6730018 |
T |
|
| Q |
209 |
atccacagcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaag |
276 |
Q |
| |
|
| ||||||| ||||| ||||||||| ||||||||||||||||||||| | | ||||||||||||| |
|
|
| T |
6730017 |
tttcacagctccgcagttcaagagatactaagttgggtaaatgacaacccctcagccaatttggaaag |
6729950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 275
Target Start/End: Original strand, 6734512 - 6734751
Alignment:
| Q |
30 |
ccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcaccaatg |
129 |
Q |
| |
|
|||||||||||| ||| ||| | ||||||| ||||| |||||||||| ||| |||||| ||||| |||| ||| |||| |||||||||| ||||| |
|
|
| T |
6734512 |
ccattcctcccagttgaccatatcctcaaatctcaaatattcaagggacttgaatggaacaattgttgaattattg---ccataaaactcttcatcaatg |
6734608 |
T |
|
| Q |
130 |
atctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacataatccacagcttaacagttgaa |
229 |
Q |
| |
|
||||||||||| ||||| | |||| ||||| | |||||||||||| || || |||||| || |||| ||||| ||| ||| | ||||| || |
|
|
| T |
6734609 |
atctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtattggcaaacaggaac---atctacaaccattcagttcaa |
6734705 |
T |
|
| Q |
230 |
gagataccaagttgggtaaatgacaacccgttatccaatttggaaa |
275 |
Q |
| |
|
||||||| |||||| ||||||||| |||| ||| |||||||||||| |
|
|
| T |
6734706 |
gagatactaagttgcgtaaatgactaccccttagccaatttggaaa |
6734751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 6140932 - 6141024
Alignment:
| Q |
114 |
aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca |
206 |
Q |
| |
|
||||||| ||||||||||| |||||| | ||| |||||| ||||||| |||||||||||| | |||||||||||||| ||| |||||||| |
|
|
| T |
6140932 |
aaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaaca |
6141024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 6257848 - 6257940
Alignment:
| Q |
114 |
aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca |
206 |
Q |
| |
|
||||||| |||||||||||||||||| | ||| |||||| ||||||| |||||||||||| | || ||||||||||| ||| |||||||| |
|
|
| T |
6257848 |
aaactctgaaccaatgatctttattccatgacagcctgaaatggaaagcttcttgagagaagggaacttcccaagtggtggcaactgggaaca |
6257940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 6932129 - 6932205
Alignment:
| Q |
2 |
taagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggac |
78 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| || | ||||| |||||| ||||||||||||||||| |
|
|
| T |
6932129 |
taagcaaaggaaacccatcaagacataaccattcctccaaacaatgcatctagtcaaatatcaaaacttcaagggac |
6932205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 8588345 - 8588440
Alignment:
| Q |
1 |
ttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgtt |
96 |
Q |
| |
|
||||||||||||||||||| ||| || | ||||||||||||||||| |||| | ||||| |||||||||||| ||| ||| |||||| ||||| |
|
|
| T |
8588345 |
ttaagcaaaggaaacccttgaaggcatatccattcctcccaattgtccatccgtttaaattccaaaacttcaagagacctgaatggaacaattgtt |
8588440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 255
Target Start/End: Complemental strand, 6521533 - 6521387
Alignment:
| Q |
106 |
ttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaac |
205 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||| ||||| | |||| ||||| | |||||||||||| || || ||||||| || |||| ||||| |
|
|
| T |
6521533 |
ttgccataaaaatcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaac |
6521434 |
T |
|
| Q |
206 |
ataatccacagcttaacagttgaagagataccaagttgggtaaatgacaa |
255 |
Q |
| |
|
|| | || ||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
6521433 |
atc-tacaatcctt--cagttgaagagatactaagttgggtaaatgacaa |
6521387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 6236371 - 6236463
Alignment:
| Q |
114 |
aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca |
206 |
Q |
| |
|
||||||| |||||||| | ||||||| | |||| ||| || ||||||| |||||||||||| | |||||||||||||| ||| |||||||| |
|
|
| T |
6236371 |
aaactctgaaccaatgaacgttattccatgacatcctgatatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaaca |
6236463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 6264364 - 6264420
Alignment:
| Q |
150 |
tgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca |
206 |
Q |
| |
|
|||||| ||||||| |||||||||||| | |||||||||||||| ||| |||||||| |
|
|
| T |
6264364 |
tgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaaca |
6264420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 6486492 - 6486418
Alignment:
| Q |
4 |
agcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggac |
78 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||| || | ||||| |||||| ||||||||||||||||| |
|
|
| T |
6486492 |
agcaaaggaaacccatcaagacataaccagtcctccaaacaatgcatctagtcaaatatcaaaacttcaagggac |
6486418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 6840183 - 6840129
Alignment:
| Q |
222 |
cagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaag |
276 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| || ||| |||| |||||||| |
|
|
| T |
6840183 |
cagttgaagagatactaagttggataaatgacaagcccttagccaacttggaaag |
6840129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 13271936 - 13271844
Alignment:
| Q |
114 |
aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca |
206 |
Q |
| |
|
||||||| ||||||||||| |||||| | ||| ||||| ||||||| || ||||||||| | |||||||||||||| ||| |||||||| |
|
|
| T |
13271936 |
aaactctgaaccaatgatctctattccatgacagccagaaatggaaagcttctcgagagaaggcaactgcccaagtggtggcaactgggaaca |
13271844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 295
Target Start/End: Complemental strand, 8966 - 8704
Alignment:
| Q |
30 |
ccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcaccaatg |
129 |
Q |
| |
|
|||||||||||| ||| ||| | | ||||| ||||| |||||||||| ||| |||||| ||||| |||| ||| |||| ||| |||||| ||||| |
|
|
| T |
8966 |
ccattcctcccagttgaccatatccacaaatctcaaatattcaagggacttgaatggaacaattgttgaattattg---ccataaaattcttcatcaatg |
8870 |
T |
|
| Q |
130 |
atctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacataatccacagcttaacagttgaa |
229 |
Q |
| |
|
||||||||||| ||||| | |||| ||||| | |||||||||||| || || ||||||| || |||| ||||||||| ||||| | |||||||| |
|
|
| T |
8869 |
atctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgctggcaaacaggaacataacccacaacccttcagttgaa |
8770 |
T |
|
| Q |
230 |
gagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtagcatg |
295 |
Q |
| |
|
||||||| ||||| |||||||||| |||| ||| ||||||||||||| | || || |||||||||| |
|
|
| T |
8769 |
gagatactaagttcggtaaatgactaccccttagccaatttggaaagctactacctttgtagcatg |
8704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 291
Target Start/End: Complemental strand, 6574711 - 6574535
Alignment:
| Q |
115 |
aactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacataatccac |
214 |
Q |
| |
|
||||||||||| |||||||||||||| | ||| |||||| |||||||||||||| | || ||||| |||||||| | || ||||||| ||||||| |
|
|
| T |
6574711 |
aactcttcaccgatgatctttattccattacaacctgaaatgaaaagctccttgagacatgggagctgtccaagtggcggaaacagggaacaaaatccac |
6574612 |
T |
|
| Q |
215 |
agcttaacagttgaagagataccaagttgggtaaatgacaacccgttatccaatttggaaagttgctgccattgtag |
291 |
Q |
| |
|
| | ||| ||||||||| ||||| ||||||||| ||| | ||| ||||||||||||| |||||||||||||| |
|
|
| T |
6574611 |
aattctgcaggataagagatactaagttaggtaaatgagaacaccttagccaatttggaaagctgctgccattgtag |
6574535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0958 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0958
Description:
Target: scaffold0958; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 1289 - 1101
Alignment:
| Q |
1 |
ttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaag-ggacaagaacggaacatttgttaaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |||| |||||||| |||||||||||| | || |||||||| | ||||| || |
|
|
| T |
1289 |
ttaagcaaaggaaacccttcaagacaataccattcttcccagcaaagcatccactcaaattccaaaacttcaagagaacctgaacggaataattgttgaa |
1190 |
T |
|
| Q |
100 |
ttgttgttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtgg |
191 |
Q |
| |
|
|| || |||| |||||||| |||||||| | |||||| | ||| | ||||||| |||||||||||||| ||| ||||| |||||||| |
|
|
| T |
1189 |
---ttatttccataaaactctttgccaatgatttctattccataacaatatgaaatataaagctccttgagataagagagctggccaagtgg |
1101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University