View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_66 (Length: 312)
Name: NF1297_low_66
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 9693034 - 9692766
Alignment:
| Q |
16 |
atggaatcatatttctatataattgatccttccatgagcaattggatgctttgtaagctcaatagctgatctattgctcaccaataatctcatcttctta |
115 |
Q |
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| T |
9693034 |
atggaatcatatttctatatatttgatccttccatgagcaattggatgctttgcaagctcaatagctgatctattgctcaccaataatctcatcttctta |
9692935 |
T |
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| Q |
116 |
tctttattcaaattcatctcttgcatcgacatgcttaaccattatatgcaaccactgaagatgcaatgtactctacctcacaggagtataaagctataac |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9692934 |
tctttattcaaattcatctcttgcatcaacatgcttaaccattatatgcaaccactgaagatgcaatgtactctacctcacaagagtataaagctataac |
9692835 |
T |
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| Q |
216 |
atattccttatttgagcaccatgacattgtttcattcccataaatgaacacatatacaacaatgttttt |
284 |
Q |
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| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9692834 |
acatttcttatttgagcaccatgacattgtttcattcccataaatgaacacatatacaacaatgttttt |
9692766 |
T |
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