View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_72 (Length: 306)
Name: NF1297_low_72
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_72 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 30 - 306
Target Start/End: Original strand, 28073348 - 28073624
Alignment:
| Q |
30 |
agattttatttatctggttcaatttttatgtgaactttaaaatctcacctataatgcaataaataaaattctattttccctacgtctctgcccgtagctt |
129 |
Q |
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| T |
28073348 |
agattttatttatctggttcaatttttatgtgaactttaaaatctcacctataatgcaataaataaaattctattttccctacgtctctgcccgtagctt |
28073447 |
T |
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| Q |
130 |
gctggaatccaatagaagttgaatgagaaaacaattttcaagacaaatctttttatgtatattcataagtaaactaaaacaaatacgcataaaaagcaaa |
229 |
Q |
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| T |
28073448 |
gctggaatccaatagaagttgaatgagaaaacaattttcaagacaaatctttttatgtatattcataagtaaactaaaacaaatacgcataaaaagcaaa |
28073547 |
T |
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| Q |
230 |
ctatattaaacaagtccgaacactatttataatgatgatttaattttctatgaggaattaacatttctacaggttcc |
306 |
Q |
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| T |
28073548 |
ctatattaaacaagtccgaacactatttataatgatgatttaattttctatgaggaattaacatttctacaggttcc |
28073624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 31 - 305
Target Start/End: Original strand, 28090280 - 28090549
Alignment:
| Q |
31 |
gattttatttatctggttcaatttttatgtgaactttaaaatctcacctataatgcaataaataaaattctattttccctacgtctctgcccgtagcttg |
130 |
Q |
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| T |
28090280 |
gattttatttatatggttcagatgttatgtggactttaaaatctcacctaaaatgctttaaataaaattcg-ttttccctatgtct--gcctgtaacttg |
28090376 |
T |
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| Q |
131 |
ctggaatccaatagaagttgaatgagaaaacaattttcaagacaaatctttttatgtatattcataagtaaactaaaacaaatacgcataaaaagcaaac |
230 |
Q |
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| T |
28090377 |
ttggaatccaatagaagttgaatgagaaaacaattttcaagacaaa--ggtttatgcatattcataatgaaactaaaacaatgacacattaaaatccaat |
28090474 |
T |
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| Q |
231 |
tatattaaacaagtccgaacactatttataatgatgatttaattttctatgaggaattaacatttctacaggttc |
305 |
Q |
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| T |
28090475 |
tatattaaacatgtctgaatgctatttataatggtgatttaattttctacgatgatctaacatttgtacaggttc |
28090549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 28034168 - 28034243
Alignment:
| Q |
134 |
gaatccaatagaagttgaatgagaaaacaattttcaagacaaatctttttatgtatattcataagtaaactaaaacaa |
211 |
Q |
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| T |
28034168 |
gaatccaatagaagttgaatgagaaaacaattttgaagacaaaac--tttatgcatattcatctttaaactaaaacaa |
28034243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 27915781 - 27915814
Alignment:
| Q |
134 |
gaatccaatagaagttgaatgagaaaacaatttt |
167 |
Q |
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| T |
27915781 |
gaatccaatataagttgaatgagaaaacaatttt |
27915814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 128 - 305
Target Start/End: Original strand, 1439050 - 1439225
Alignment:
| Q |
128 |
ttgctggaatccaatagaagttgaatgagaaaacaattttcaagacaaatctttttatgtatattcataagtaaactaaaacaaatacgcataaaaagca |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||||| |||||||||||| ||||||| ||| |
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| T |
1439050 |
ttgctggaatccaatagaagttgaatgagaaaacaattttcaagacaaagc--tttgtgcatattcataatgaaactaaaacaattacgcattgaaaaac |
1439147 |
T |
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| Q |
228 |
aactatattaaacaagtccgaacactatttataatgatgatttaattttctatgaggaattaacatttctacaggttc |
305 |
Q |
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| T |
1439148 |
aattatattaaacaagtccgaacgttatttataatgaagatttaattctctatgatgatctaacatttctacaggttc |
1439225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 1438982 - 1439037
Alignment:
| Q |
30 |
agattttatttatctggttcaatttttatgtgaactttaaaatctcacctataatg |
85 |
Q |
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| T |
1438982 |
agattttatttatctagttcagatgttatgtgaactttaaaatctcacctataatg |
1439037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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