View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1297_low_74 (Length: 304)

Name: NF1297_low_74
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1297_low_74
NF1297_low_74
[»] chr7 (4 HSPs)
chr7 (28-276)||(38320422-38320671)
chr7 (35-157)||(18851100-18851222)
chr7 (30-100)||(7225293-7225363)
chr7 (53-116)||(18852897-18852960)
[»] chr2 (5 HSPs)
chr2 (53-157)||(36681117-36681220)
chr2 (28-107)||(40783092-40783171)
chr2 (53-116)||(36682360-36682423)
chr2 (35-116)||(36404375-36404456)
chr2 (29-96)||(5062187-5062254)
[»] chr6 (1 HSPs)
chr6 (53-116)||(20117787-20117850)
[»] chr3 (2 HSPs)
chr3 (30-116)||(38524352-38524438)
chr3 (35-110)||(38525755-38525830)
[»] chr4 (8 HSPs)
chr4 (53-116)||(29213951-29214014)
chr4 (54-99)||(2274143-2274188)
chr4 (36-97)||(21072175-21072236)
chr4 (53-110)||(29215048-29215105)
chr4 (30-110)||(44491719-44491799)
chr4 (54-110)||(56252997-56253053)
chr4 (30-111)||(11385688-11385769)
chr4 (53-177)||(25041059-25041183)
[»] chr1 (2 HSPs)
chr1 (32-99)||(50140384-50140451)
chr1 (46-104)||(48571848-48571906)
[»] chr8 (1 HSPs)
chr8 (30-98)||(42128870-42128938)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 28 - 276
Target Start/End: Complemental strand, 38320671 - 38320422
Alignment:
Q  28 ttggctaaattacataactagtcttttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtctcataacttacctcaat 127  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  38320671 ttggcaaaattacataactagtcttttaactaattatgagatttcatattggtcccataattagttttcgtttcaatttggtcccataacttacctcaat 38320572  T
Q  128 taatcatattaatccaattatgttaactttgaactccaatgtcttaggtggacacacacttaaagtggtccaccaaaaacctcattaatttgttgaatac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38320571 taatcatattaatccaattatgttaactttgaactccaatgtcttaggtggacacacacttaaa-tggtccaccaaaaacctcattaatttgttgaatac 38320473  T
Q  228 tagtcgtttgacc--ttttttctaaaaatacagcccttatatcatcaatgt 276  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  38320472 tagtcgtttgaccttttttttctaaaaatacagcccttatatcatccatgt 38320422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 18851100 - 18851222
Alignment:
Q  35 aattacataactagtcttttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtctcataacttacctcaattaatcat 134  Q
    |||||||||| ||||| ||||| ||||||||| ||| ||| ||||||| |||||||||||| | |||||||||||||||||| ||| |||| ||| |||     
T  18851100 aattacataaatagtcctttaattaattatgaaattccatgttggtcctataattaatttttgcttcaatttggtctcataatttatctcagttagtcaa 18851199  T
Q  135 attaatccaattatgttaacttt 157  Q
    || ||| |||||  |||||||||    
T  18851200 ataaattcaattccgttaacttt 18851222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 7225363 - 7225293
Alignment:
Q  30 ggctaaattacataactagtcttttaactaattatgagatttcatattggtcccataattaattttcgttt 100  Q
    |||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||| |||||| ||||    
T  7225363 ggctaaattacatatctagtctcttaactaattatgaggttttatattggtcccataatcaatttttgttt 7225293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 18852960 - 18852897
Alignment:
Q  53 ttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtctcataa 116  Q
    |||||||||||||| |||||||||||| ||  ||||||||||||| |||||||||||| |||||    
T  18852960 ttaactaattatgaaatttcatattggccctgtaattaattttcgcttcaatttggtcccataa 18852897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 36681117 - 36681220
Alignment:
Q  53 ttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtctcataacttacctcaattaatcatattaatccaattatgtta 152  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| || ||||  | | ||| || ||||| |||||||||    
T  36681117 ttaactaattatgagatttcatattggtcccacaattaattttcgtttcaattttgtcccataagtttcctccgtcagtcaaataaatcc-attatgtta 36681215  T
Q  153 acttt 157  Q
    |||||    
T  36681216 acttt 36681220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 40783092 - 40783171
Alignment:
Q  28 ttggctaaattacataactagtcttttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttg 107  Q
    |||||||||||||||||||||||  ||||||||||||||| ||| ||  |||||||||||||||| ||||||||||||||    
T  40783092 ttggctaaattacataactagtcccttaactaattatgagttttgatggtggtcccataattaatattcgtttcaatttg 40783171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 36682423 - 36682360
Alignment:
Q  53 ttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtctcataa 116  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||| |||||    
T  36682423 ttaactaattatgagatttcacattggttccacaattaattttcgtttcagtttggtcccataa 36682360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 36404456 - 36404375
Alignment:
Q  35 aattacataactagtcttttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtctcataa 116  Q
    |||||||||| | ||| ||||||||||||| ||||||||| |||||||||| ||||||||| |||| ||| |||| ||||||    
T  36404456 aattacataaatggtcctttaactaattataagatttcattttggtcccattattaatttttgttttaatatggtttcataa 36404375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 5062254 - 5062187
Alignment:
Q  29 tggctaaattacataactagtcttttaactaattatgagatttcatattggtcccataattaattttc 96  Q
    ||||| |||||||||| | |||  |||| ||||||||||||||||| |||||||| | ||||||||||    
T  5062254 tggcttaattacataaatggtcccttaaataattatgagatttcattttggtccccttattaattttc 5062187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 20117787 - 20117850
Alignment:
Q  53 ttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtctcataa 116  Q
    ||||||||||||||| |||||||||| || ||| ||||||||||||||||||||||||| ||||    
T  20117787 ttaactaattatgaggtttcatattgatcgcattattaattttcgtttcaatttggtcttataa 20117850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 38524352 - 38524438
Alignment:
Q  30 ggctaaattacataactagtcttttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtctcataa 116  Q
    |||| |||||||||| | |||  |||||||||||||||||||||| |||||||||| | ||||||| ||| |||| ||||| |||||    
T  38524352 ggcttaattacataaatggtcccttaactaattatgagatttcattttggtcccattaataatttttgttccaatatggtcccataa 38524438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 38525830 - 38525755
Alignment:
Q  35 aattacataactagtcttttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtc 110  Q
    |||||||||| | |||  |||||||||||||||||||||| |||||||| | | ||||||| |||||||| |||||    
T  38525830 aattacataaatggtcccttaactaattatgagatttcattttggtccccttagtaatttttgtttcaatatggtc 38525755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 29213951 - 29214014
Alignment:
Q  53 ttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtctcataa 116  Q
    ||||||||| |||||||||||| ||||| || | |||||||||||||| ||| |||||||||||    
T  29213951 ttaactaatgatgagatttcatgttggttcccttattaattttcgttttaatatggtctcataa 29214014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 2274143 - 2274188
Alignment:
Q  54 taactaattatgagatttcatattggtcccataattaattttcgtt 99  Q
    |||||||||||||||||||||||||| ||| | |||||||||||||    
T  2274143 taactaattatgagatttcatattggcccccttattaattttcgtt 2274188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 21072236 - 21072175
Alignment:
Q  36 attacataactagtcttttaactaattatgagatttcatattggtcccataattaattttcg 97  Q
    |||||| || |||||  |||||||||||||||||||||| |||||||| | |||||||||||    
T  21072236 attacacaaatagtcccttaactaattatgagatttcatgttggtccccttattaattttcg 21072175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 29215105 - 29215048
Alignment:
Q  53 ttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtc 110  Q
    ||||||||||||||||||| || |||||||| | ||||| |||||||||||| |||||    
T  29215105 ttaactaattatgagattttatgttggtccccttattaaatttcgtttcaatatggtc 29215048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 44491719 - 44491799
Alignment:
Q  30 ggctaaattacataactagtcttttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtc 110  Q
    |||| |||||||||| | |||  |||| ||||||||||||||||  |||||||||| |||||||||||  ||| |||||||    
T  44491719 ggcttaattacataaatggtcccttaaataattatgagatttcaatttggtcccattattaattttcgcctcattttggtc 44491799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 56253053 - 56252997
Alignment:
Q  54 taactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtc 110  Q
    |||||||||||||| || ||| |||||||||||| |||| || ||||||||||||||    
T  56253053 taactaattatgagtttccatgttggtcccataaataatctttgtttcaatttggtc 56252997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 11385769 - 11385688
Alignment:
Q  30 ggctaaattacataactagtcttttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtct 111  Q
    |||| |||||||||| | ||| ||||| ||||||||||||||||  |||||||  | ||||||||||||  || ||||||||    
T  11385769 ggcttaattacataaatggtcctttaaataattatgagatttcaatttggtccatttattaattttcgtcccattttggtct 11385688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 25041183 - 25041059
Alignment:
Q  53 ttaactaattatgagatttcatattggtcccataattaattttcgtttcaatttggtctcataacttacctcaattaatcatattaatccaattatgtta 152  Q
    ||||||| ||||| | |||||||| ||  | |||||||| |||||||   || | ||||||||||||||||| ||||||||  ||  | ||||| |||||    
T  25041183 ttaactatttatgcggtttcatatcggaactataattaactttcgttaagatattgtctcataacttacctccattaatcaagttggttcaattttgtta 25041084  T
Q  153 actttgaactccaatgtcttaggtg 177  Q
    ||||| ||  ||||||||| |||||    
T  25041083 acttttaatcccaatgtctaaggtg 25041059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 50140384 - 50140451
Alignment:
Q  32 ctaaattacataactagtcttttaactaattatgagatttcatattggtcccataattaattttcgtt 99  Q
    |||||||||||||    ||| |||| || ||||||| |||||||||||||||||||||||||||||||    
T  50140384 ctaaattacataatcgatctcttaattagttatgagctttcatattggtcccataattaattttcgtt 50140451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 48571906 - 48571848
Alignment:
Q  46 tagtcttttaactaattatgagatttcatattggtcccataattaattttcgtttcaat 104  Q
    |||||| |||||||||||||||||||||| ||| |||  |  |||||||||||||||||    
T  48571906 tagtctcttaactaattatgagatttcatgttgatcctcttgttaattttcgtttcaat 48571848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 42128938 - 42128870
Alignment:
Q  30 ggctaaattacataactagtcttttaactaattatgagatttcatattggtcccataattaattttcgt 98  Q
    |||| |||||||||| | ||| ||||| ||||||||||||||||  ||||| || | ||||||||||||    
T  42128938 ggcttaattacataaatggtcctttaaataattatgagatttcaatttggttcctttattaattttcgt 42128870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University