View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1297_low_77 (Length: 300)
Name: NF1297_low_77
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_77 |
 | |
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| [»] chr5 (5 HSPs) |
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| [»] chr4 (8 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 31 - 300
Target Start/End: Original strand, 41722878 - 41723147
Alignment:
| Q |
31 |
attgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaattta |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41722878 |
attgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaattta |
41722977 |
T |
|
| Q |
131 |
ccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttac |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41722978 |
ccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttac |
41723077 |
T |
|
| Q |
231 |
ggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41723078 |
ggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagta |
41723147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 33 - 300
Target Start/End: Original strand, 41718154 - 41718421
Alignment:
| Q |
33 |
tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaatttacc |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
41718154 |
tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaatttacc |
41718253 |
T |
|
| Q |
133 |
attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41718254 |
attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg |
41718353 |
T |
|
| Q |
233 |
tcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718354 |
tcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaagta |
41718421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 34352226 - 34352259
Alignment:
| Q |
267 |
tcatcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34352226 |
tcatcccaaatcagtaacaacacaagaacaagta |
34352259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 34359934 - 34359967
Alignment:
| Q |
267 |
tcatcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34359934 |
tcatcccaaatcagtaacaacacaagaacaagta |
34359967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 29585640 - 29585607
Alignment:
| Q |
267 |
tcatcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
29585640 |
tcatcccaaatcagtaacaacacaacaacaagta |
29585607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 48702228 - 48702127
Alignment:
| Q |
199 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
298 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48702228 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
48702129 |
T |
|
| Q |
299 |
ta |
300 |
Q |
| |
|
|| |
|
|
| T |
48702128 |
ta |
48702127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 48697539 - 48697438
Alignment:
| Q |
199 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
298 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48697539 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcattattctactcatcccaaatcagtaacaacacaagaacaag |
48697440 |
T |
|
| Q |
299 |
ta |
300 |
Q |
| |
|
|| |
|
|
| T |
48697439 |
ta |
48697438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 297
Target Start/End: Complemental strand, 30945901 - 30945803
Alignment:
| Q |
199 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa |
297 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
30945901 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaa |
30945803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 289
Target Start/End: Complemental strand, 30950607 - 30950517
Alignment:
| Q |
199 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacac |
289 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30950607 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacac |
30950517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 24520363 - 24520331
Alignment:
| Q |
268 |
catcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24520363 |
catcccaaatcagtaacaacacaagaacaagta |
24520331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 300
Target Start/End: Original strand, 42265883 - 42265914
Alignment:
| Q |
269 |
atcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42265883 |
atcccaaatcagtaacaacacaagaacaagta |
42265914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 300
Target Start/End: Original strand, 42270602 - 42270633
Alignment:
| Q |
269 |
atcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42270602 |
atcccaaatcagtaacaacacaagaacaagta |
42270633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 48781266 - 48781360
Alignment:
| Q |
83 |
ttttcacatggcagtaatacatgtttgacaaaagggc--tttgcaatttaccattcagattttcggtgccaacattgtcaacataaattggttggc |
176 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||| ||||| ||||| |||| | ||||| ||||| | ||| ||||||||||||||||||| |
|
|
| T |
48781266 |
ttttcacatggcagtaaaaggtgtttgacgaaagggctttttgc-atttaacatttatatttttggtgcatatattttcaacataaattggttggc |
48781360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 5199062 - 5198961
Alignment:
| Q |
199 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
298 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5199062 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
5198963 |
T |
|
| Q |
299 |
ta |
300 |
Q |
| |
|
|| |
|
|
| T |
5198962 |
ta |
5198961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 2817658 - 2817557
Alignment:
| Q |
199 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
298 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2817658 |
ataaatgcaattggttggggcatggctctttcactagtatacatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaag |
2817559 |
T |
|
| Q |
299 |
ta |
300 |
Q |
| |
|
|| |
|
|
| T |
2817558 |
ta |
2817557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 5818852 - 5818819
Alignment:
| Q |
267 |
tcatcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5818852 |
tcatcccaaatcagtaacaacacaagaacaagta |
5818819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 5823613 - 5823581
Alignment:
| Q |
268 |
catcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5823613 |
catcccaaatcagtaacaacacaagaacaagta |
5823581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 297
Target Start/End: Complemental strand, 27879134 - 27879036
Alignment:
| Q |
199 |
ataaatgaaaatggttgaggcatggcttttacggtcctataaatagcatgtcccttgcaccattctactcatcccaaatcagtaacaacacaagaacaa |
297 |
Q |
| |
|
||||||| || |||||| ||||||||| || | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
27879134 |
ataaatgcaattggttggggcatggctctttcactagtataaatagcatgtcccttgcaccattctactcatcccaaattagtaacaacaccagaacaa |
27879036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 26976470 - 26976437
Alignment:
| Q |
267 |
tcatcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26976470 |
tcatcccaaatcagtaacaacacaagaacaagta |
26976437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 1234680 - 1234712
Alignment:
| Q |
268 |
catcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1234680 |
catcccaaatcagtaacaacacaagaacaagta |
1234712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 300
Target Start/End: Complemental strand, 27874327 - 27874296
Alignment:
| Q |
269 |
atcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27874327 |
atcccaaatcagtaacaacacaagaacaagta |
27874296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 9439710 - 9439678
Alignment:
| Q |
268 |
catcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
9439710 |
catcccaaatcagtaacaacacaagaacaagta |
9439678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 9444430 - 9444398
Alignment:
| Q |
268 |
catcccaaatcagtaacaacacaagaacaagta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
9444430 |
catcccaaatcagtaacaacacaagaacaagta |
9444398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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