View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297_low_8 (Length: 604)
Name: NF1297_low_8
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 31 - 432
Target Start/End: Complemental strand, 2491504 - 2491100
Alignment:
| Q |
31 |
aacctgtgttacaaggtgcttacattaagcaatatattctacatacatatcagatgcaaaagaaacataagacaaattgaattaggaaaggaaccccgga |
130 |
Q |
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| T |
2491504 |
aacctgtgttacaaggtgcttacattaagcaatatattctacatacatatcagatgcaaaagaaacataagacaaattgaattaggaaaggaaccccgga |
2491405 |
T |
|
| Q |
131 |
tatgcgacctagttcagagacataaaatgctaagagcaattcccattgggaatttctgtgtttttaagctt---aactaactgttatttgttgtgtttcg |
227 |
Q |
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| T |
2491404 |
tatgcgacctagttcagagacataaaatgctaagagcaattcccattgggagtttctgtgtttttaagcttcttaactaactgttatttgttgtgtttcg |
2491305 |
T |
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| Q |
228 |
ccattggaacatgtttatgtggtagacatgattgtttaaagctgcctttgcataaagaacctttgcttaaatgtaaaaatatggatttactccatcaaat |
327 |
Q |
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| T |
2491304 |
ccattggaacatgtttatgtggtagacatgattgtttaaagctgcctttgcataaagaacctttgcttaaatgtaaaaatatggatttactccatcaaat |
2491205 |
T |
|
| Q |
328 |
ctcaacgcttggagtaaaaaatgatagagtcgcgggagttgcactattagattaaaatgtgattgaaatcttaaaagcaacatggcatgataagatccac |
427 |
Q |
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| T |
2491204 |
ctcaacgcttggagtaaaaaatgatagagtcgcgggagttgcactattagattaaaatgtgattgaaatcttaaaagcaacatggcataataagatccac |
2491105 |
T |
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| Q |
428 |
ctaat |
432 |
Q |
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| T |
2491104 |
ctaat |
2491100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 481
Target Start/End: Complemental strand, 2491069 - 2491041
Alignment:
| Q |
453 |
ttaatcatatcattagagaggctcaaatg |
481 |
Q |
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| T |
2491069 |
ttaatcatatcattagagaggctcaaatg |
2491041 |
T |
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